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Predicting non-small cell lung cancer prognosis by fully automated microscopic pathology image features

Overview of attention for article published in Nature Communications, August 2016
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About this Attention Score

  • In the top 5% of all research outputs scored by Altmetric
  • High Attention Score compared to outputs of the same age (99th percentile)
  • High Attention Score compared to outputs of the same age and source (95th percentile)

Mentioned by

news
19 news outlets
blogs
5 blogs
policy
1 policy source
twitter
183 X users
patent
4 patents
facebook
5 Facebook pages
googleplus
1 Google+ user
reddit
2 Redditors

Citations

dimensions_citation
743 Dimensions

Readers on

mendeley
819 Mendeley
citeulike
2 CiteULike
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Title
Predicting non-small cell lung cancer prognosis by fully automated microscopic pathology image features
Published in
Nature Communications, August 2016
DOI 10.1038/ncomms12474
Pubmed ID
Authors

Kun-Hsing Yu, Ce Zhang, Gerald J. Berry, Russ B. Altman, Christopher Ré, Daniel L. Rubin, Michael Snyder

Abstract

Lung cancer is the most prevalent cancer worldwide, and histopathological assessment is indispensable for its diagnosis. However, human evaluation of pathology slides cannot accurately predict patients' prognoses. In this study, we obtain 2,186 haematoxylin and eosin stained histopathology whole-slide images of lung adenocarcinoma and squamous cell carcinoma patients from The Cancer Genome Atlas (TCGA), and 294 additional images from Stanford Tissue Microarray (TMA) Database. We extract 9,879 quantitative image features and use regularized machine-learning methods to select the top features and to distinguish shorter-term survivors from longer-term survivors with stage I adenocarcinoma (P<0.003) or squamous cell carcinoma (P=0.023) in the TCGA data set. We validate the survival prediction framework with the TMA cohort (P<0.036 for both tumour types). Our results suggest that automatically derived image features can predict the prognosis of lung cancer patients and thereby contribute to precision oncology. Our methods are extensible to histopathology images of other organs.

X Demographics

X Demographics

The data shown below were collected from the profiles of 183 X users who shared this research output. Click here to find out more about how the information was compiled.
Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 819 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
United States 4 <1%
United Kingdom 3 <1%
France 2 <1%
Germany 2 <1%
Sweden 2 <1%
Switzerland 2 <1%
Turkey 1 <1%
Brazil 1 <1%
Spain 1 <1%
Other 1 <1%
Unknown 800 98%

Demographic breakdown

Readers by professional status Count As %
Student > Ph. D. Student 146 18%
Researcher 130 16%
Student > Master 97 12%
Student > Bachelor 57 7%
Other 46 6%
Other 144 18%
Unknown 199 24%
Readers by discipline Count As %
Medicine and Dentistry 152 19%
Computer Science 137 17%
Biochemistry, Genetics and Molecular Biology 72 9%
Engineering 72 9%
Agricultural and Biological Sciences 61 7%
Other 95 12%
Unknown 230 28%
Attention Score in Context

Attention Score in Context

This research output has an Altmetric Attention Score of 292. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 04 May 2023.
All research outputs
#122,164
of 25,775,807 outputs
Outputs from Nature Communications
#1,754
of 58,407 outputs
Outputs of similar age
#2,376
of 338,943 outputs
Outputs of similar age from Nature Communications
#38
of 801 outputs
Altmetric has tracked 25,775,807 research outputs across all sources so far. Compared to these this one has done particularly well and is in the 99th percentile: it's in the top 5% of all research outputs ever tracked by Altmetric.
So far Altmetric has tracked 58,407 research outputs from this source. They typically receive a lot more attention than average, with a mean Attention Score of 55.4. This one has done particularly well, scoring higher than 97% of its peers.
Older research outputs will score higher simply because they've had more time to accumulate mentions. To account for age we can compare this Altmetric Attention Score to the 338,943 tracked outputs that were published within six weeks on either side of this one in any source. This one has done particularly well, scoring higher than 99% of its contemporaries.
We're also able to compare this research output to 801 others from the same source and published within six weeks on either side of this one. This one has done particularly well, scoring higher than 95% of its contemporaries.