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Bacterial Pathogenesis

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Cover of 'Bacterial Pathogenesis'

Table of Contents

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    Book Overview
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    Chapter 1 Protein-Based Strategies to Identify and Isolate Bacterial Virulence Factors.
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    Chapter 2 Analysis of Bacterial Surface Interactions with Mass Spectrometry-Based Proteomics.
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    Chapter 3 Differential Radial Capillary Action of Ligand Assay (DRaCALA) for High-Throughput Detection of Protein-Metabolite Interactions in Bacteria.
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    Chapter 4 Identifying Bacterial Immune Evasion Proteins Using Phage Display.
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    Chapter 5 Competition for Iron Between Host and Pathogen: A Structural Case Study on Helicobacter pylori.
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    Chapter 6 Common Challenges in Studying the Structure and Function of Bacterial Proteins: Case Studies from Helicobacter pylori.
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    Chapter 7 Development of a Single Locus Sequence Typing (SLST) Scheme for Typing Bacterial Species Directly from Complex Communities.
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    Chapter 8 Reconstructing the Ancestral Relationships Between Bacterial Pathogen Genomes.
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    Chapter 9 Making Fluorescent Streptococci and Enterococci for Live Imaging.
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    Chapter 10 Computer Vision-Based Image Analysis of Bacteria.
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    Chapter 11 Assessing Vacuolar Escape of Listeria Monocytogenes.
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    Chapter 12 Immobilization Techniques of Bacteria for Live Super-resolution Imaging Using Structured Illumination Microscopy.
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    Chapter 13 Negative Staining and Transmission Electron Microscopy of Bacterial Surface Structures.
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    Chapter 14 Detection of Intracellular Proteins by High-Resolution Immunofluorescence Microscopy in Streptococcus pyogenes.
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    Chapter 15 Antibody Guided Molecular Imaging of Infective Endocarditis.
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    Chapter 16 The Zebrafish as a Model for Human Bacterial Infections.
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    Chapter 17 Determining Platelet Activation and Aggregation in Response to Bacteria.
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    Chapter 18 Killing Bacteria with Cytotoxic Effector Proteins of Human Killer Immune Cells: Granzymes, Granulysin, and Perforin.
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    Chapter 19 In Vitro and In Vivo Biofilm Formation by Pathogenic Streptococci.
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    Chapter 20 Murine Mycobacterium marinum Infection as a Model for Tuberculosis.
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    Chapter 21 Generating and Purifying Fab Fragments from Human and Mouse IgG Using the Bacterial Enzymes IdeS, SpeB and Kgp.
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    Chapter 22 Measuring Antibody Orientation at the Bacterial Surface.
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    Chapter 23 Toward Clinical use of the IgG Specific Enzymes IdeS and EndoS against Antibody-Mediated Diseases.
Attention for Chapter 6: Common Challenges in Studying the Structure and Function of Bacterial Proteins: Case Studies from Helicobacter pylori.
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Chapter title
Common Challenges in Studying the Structure and Function of Bacterial Proteins: Case Studies from Helicobacter pylori.
Chapter number 6
Book title
Bacterial Pathogenesis
Published in
Methods in molecular biology, January 2017
DOI 10.1007/978-1-4939-6673-8_6
Pubmed ID
Book ISBNs
978-1-4939-6671-4, 978-1-4939-6673-8
Authors

Daniel A. Bonsor, Eric J. Sundberg

Editors

Pontus Nordenfelt, Mattias Collin

Abstract

Employing biophysical and structural methods is a powerful way to elucidate mechanisms of molecular recognition in bacterial pathogenesis. Such studies invariably depend on the production of pure, folded and stable proteins. Many proteins that can be expressed recombinantly ultimately fail to meet one or more of these criteria. The cag proteins from Helicobacter pylori form a secretion system that delivers the oncoprotein, CagA, into human gastric epithelial cells through an interaction between CagL and host cell integrins, where it can cause gastric adenocarcinoma. Expression of full length CagA and CagL is problematic as CagA undergoes rapid degradation during purification and CagL is thermally unstable. Here, we describe a method for the purification of CagA that results in the production of the full length protein through coexpression with its endogenous chaperone, CagF, and its subsequent separation from its chaperone. Furthermore, we detail the production of CagL and the use of differential scanning fluorimetry to identify how CagL is thermally stabilized by reduced pH, which led to a new crystal form of CagL and novel insight to pathogenic mechanisms. The methods described here for the production of stable cag proteins can be applied to a wide range of proteins involved in bacterial pathogenesis.

Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 3 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
Turkey 1 33%
Unknown 2 67%

Demographic breakdown

Readers by professional status Count As %
Professor > Associate Professor 1 33%
Student > Bachelor 1 33%
Student > Master 1 33%
Readers by discipline Count As %
Immunology and Microbiology 1 33%
Unknown 2 67%