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X Demographics
Mendeley readers
Attention Score in Context
| Title |
Comparative Genome Structure, Secondary Metabolite, and Effector Coding Capacity across Cochliobolus Pathogens
|
|---|---|
| Published in |
PLoS Genetics, January 2013
|
| DOI | 10.1371/journal.pgen.1003233 |
| Pubmed ID | |
| Authors |
Bradford J. Condon, Yueqiang Leng, Dongliang Wu, Kathryn E. Bushley, Robin A. Ohm, Robert Otillar, Joel Martin, Wendy Schackwitz, Jane Grimwood, NurAinIzzati MohdZainudin, Chunsheng Xue, Rui Wang, Viola A. Manning, Braham Dhillon, Zheng Jin Tu, Brian J. Steffenson, Asaf Salamov, Hui Sun, Steve Lowry, Kurt LaButti, James Han, Alex Copeland, Erika Lindquist, Kerrie Barry, Jeremy Schmutz, Scott E. Baker, Lynda M. Ciuffetti, Igor V. Grigoriev, Shaobin Zhong, B. Gillian Turgeon |
| Abstract |
The genomes of five Cochliobolus heterostrophus strains, two Cochliobolus sativus strains, three additional Cochliobolus species (Cochliobolus victoriae, Cochliobolus carbonum, Cochliobolus miyabeanus), and closely related Setosphaeria turcica were sequenced at the Joint Genome Institute (JGI). The datasets were used to identify SNPs between strains and species, unique genomic regions, core secondary metabolism genes, and small secreted protein (SSP) candidate effector encoding genes with a view towards pinpointing structural elements and gene content associated with specificity of these closely related fungi to different cereal hosts. Whole-genome alignment shows that three to five percent of each genome differs between strains of the same species, while a quarter of each genome differs between species. On average, SNP counts among field isolates of the same C. heterostrophus species are more than 25× higher than those between inbred lines and 50× lower than SNPs between Cochliobolus species. The suites of nonribosomal peptide synthetase (NRPS), polyketide synthase (PKS), and SSP-encoding genes are astoundingly diverse among species but remarkably conserved among isolates of the same species, whether inbred or field strains, except for defining examples that map to unique genomic regions. Functional analysis of several strain-unique PKSs and NRPSs reveal a strong correlation with a role in virulence. |
X Demographics
Geographical breakdown
| Country | Count | As % |
|---|---|---|
| United States | 2 | 50% |
| Italy | 1 | 25% |
| Unknown | 1 | 25% |
Demographic breakdown
| Type | Count | As % |
|---|---|---|
| Scientists | 4 | 100% |
Mendeley readers
The data shown below were compiled from readership statistics for 236 Mendeley readers of this research output. Click here to see the associated Mendeley record.
Geographical breakdown
| Country | Count | As % |
|---|---|---|
| United States | 5 | 2% |
| India | 2 | <1% |
| Netherlands | 1 | <1% |
| Canada | 1 | <1% |
| Brazil | 1 | <1% |
| Mexico | 1 | <1% |
| Taiwan | 1 | <1% |
| Unknown | 224 | 95% |
Demographic breakdown
| Readers by professional status | Count | As % |
|---|---|---|
| Student > Ph. D. Student | 63 | 27% |
| Researcher | 44 | 19% |
| Student > Master | 31 | 13% |
| Student > Bachelor | 24 | 10% |
| Professor | 10 | 4% |
| Other | 33 | 14% |
| Unknown | 31 | 13% |
| Readers by discipline | Count | As % |
|---|---|---|
| Agricultural and Biological Sciences | 140 | 59% |
| Biochemistry, Genetics and Molecular Biology | 32 | 14% |
| Chemistry | 5 | 2% |
| Computer Science | 3 | 1% |
| Psychology | 3 | 1% |
| Other | 17 | 7% |
| Unknown | 36 | 15% |
Attention Score in Context
This research output has an Altmetric Attention Score of 10. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 02 May 2023.
All research outputs
#3,924,212
of 26,150,873 outputs
Outputs from PLoS Genetics
#3,140
of 9,035 outputs
Outputs of similar age
#37,935
of 292,380 outputs
Outputs of similar age from PLoS Genetics
#43
of 202 outputs
Altmetric has tracked 26,150,873 research outputs across all sources so far. Compared to these this one has done well and is in the 84th percentile: it's in the top 25% of all research outputs ever tracked by Altmetric.
So far Altmetric has tracked 9,035 research outputs from this source. They typically receive a lot more attention than average, with a mean Attention Score of 17.8. This one has gotten more attention than average, scoring higher than 65% of its peers.
Older research outputs will score higher simply because they've had more time to accumulate mentions. To account for age we can compare this Altmetric Attention Score to the 292,380 tracked outputs that were published within six weeks on either side of this one in any source. This one has done well, scoring higher than 87% of its contemporaries.
We're also able to compare this research output to 202 others from the same source and published within six weeks on either side of this one. This one has done well, scoring higher than 78% of its contemporaries.