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Algorithms in Bioinformatics

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Cover of 'Algorithms in Bioinformatics'

Table of Contents

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    Book Overview
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    Chapter 1 Multichromosomal Genome Median and Halving Problems
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    Chapter 2 A Branch-and-Bound Method for the Multichromosomal Reversal Median Problem
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    Chapter 3 Decompositions of Multiple Breakpoint Graphs and Rapid Exact Solutions to the Median Problem
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    Chapter 4 Read Mapping Algorithms for Single Molecule Sequencing Data
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    Chapter 5 Exact Transcriptome Reconstruction from Short Sequence Reads
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    Chapter 6 Post-Hybridization Quality Measures for Oligos in Genome-Wide Microarray Experiments
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    Chapter 7 NAPX: A Polynomial Time Approximation Scheme for the Noah’s Ark Problem
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    Chapter 8 Minimum Common String Partition Parameterized
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    Chapter 9 Hardness and Approximability of the Inverse Scope Problem
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    Chapter 10 Rapid Neighbour-Joining
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    Chapter 11 Efficiently Computing Arbitrarily-Sized Robinson-Foulds Distance Matrices
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    Chapter 12 Efficient Genome Wide Tagging by Reduction to SAT
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    Chapter 13 Computing the Minimal Tiling Path from a Physical Map by Integer Linear Programming
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    Chapter 14 An Efficient Lagrangian Relaxation for the Contact Map Overlap Problem
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    Chapter 15 A Faster Algorithm for RNA Co-folding
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    Chapter 16 An Automated Combination of Kernels for Predicting Protein Subcellular Localization
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    Chapter 17 Fast Target Set Reduction for Large-Scale Protein Function Prediction: A Multi-class Multi-label Machine Learning Approach
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    Chapter 18 Multiple Instance Learning Allows MHC Class II Epitope Predictions Across Alleles
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    Chapter 19 An Algorithm for Orienting Graphs Based on Cause-Effect Pairs and Its Applications to Orienting Protein Networks
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    Chapter 20 Enumerating Precursor Sets of Target Metabolites in a Metabolic Network
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    Chapter 21 Boosting the Performance of Inference Algorithms for Transcriptional Regulatory Networks Using a Phylogenetic Approach
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    Chapter 22 Fast Bayesian Haplotype Inference Via Context Tree Weighting
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    Chapter 23 Genotype Sequence Segmentation: Handling Constraints and Noise.
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    Chapter 24 Constructing Phylogenetic Supernetworks from Quartets
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    Chapter 25 Summarizing Multiple Gene Trees Using Cluster Networks
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    Chapter 26 Fast and Adaptive Variable Order Markov Chain Construction
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    Chapter 27 Computing Alignment Seed Sensitivity with Probabilistic Arithmetic Automata
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    Chapter 28 The Relation between Indel Length and Functional Divergence: A Formal Study
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    Chapter 29 Detecting Repeat Families in Incompletely Sequenced Genomes
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    Chapter 30 Novel Phylogenetic Network Inference by Combining Maximum Likelihood and Hidden Markov Models
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    Chapter 31 A Local Move Set for Protein Folding in Triangular Lattice Models
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    Chapter 32 Protein Decoy Generation Using Branch and Bound with Efficient Bounding
Overall attention for this book and its chapters
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Mentioned by

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2 blogs
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2 Wikipedia pages
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1 Q&A thread

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Title
Algorithms in Bioinformatics
Published by
Springer Berlin Heidelberg, January 2008
DOI 10.1007/978-3-540-87361-7
ISBNs
978-3-54-087360-0, 978-3-54-087361-7
Authors

Crandall, Keith A, Lagergren, Jens

Editors

Keith A. Crandall, Jens Lagergren

Twitter Demographics

The data shown below were collected from the profiles of 2 tweeters who shared this research output. Click here to find out more about how the information was compiled.

Mendeley readers

The data shown below were compiled from readership statistics for 1 Mendeley reader of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
Germany 2 200%
France 1 100%
Chile 1 100%
Greece 1 100%
United States 1 100%
Poland 1 100%

Demographic breakdown

Readers by professional status Count As %
Student > Ph. D. Student 10 1000%
Researcher 6 600%
Student > Master 4 400%
Professor 2 200%
Professor > Associate Professor 2 200%
Other 4 400%
Readers by discipline Count As %
Agricultural and Biological Sciences 9 900%
Computer Science 9 900%
Biochemistry, Genetics and Molecular Biology 3 300%
Mathematics 2 200%
Engineering 2 200%
Other 1 100%