↓ Skip to main content

Long Non-Coding RNAs

Overview of attention for book
Cover of 'Long Non-Coding RNAs'

Table of Contents

  1. Altmetric Badge
    Book Overview
  2. Altmetric Badge
    Chapter 1 LncRNA Pulldown Combined with Mass Spectrometry to Identify the Novel LncRNA-Associated Proteins.
  3. Altmetric Badge
    Chapter 2 Cross-Linking Immunoprecipitation and qPCR (CLIP-qPCR) Analysis to Map Interactions Between Long Noncoding RNAs and RNA-Binding Proteins.
  4. Altmetric Badge
    Chapter 3 Characterization of Long Noncoding RNA-Associated Proteins by RNA-Immunoprecipitation.
  5. Altmetric Badge
    Chapter 4 Isolation of Protein Complexes Associated with Long Noncoding RNAs.
  6. Altmetric Badge
    Chapter 5 Profiling Long Noncoding RNA Expression Using Custom-Designed Microarray.
  7. Altmetric Badge
    Chapter 6 Long Noncoding RNA Expression Profiling Using Arraystar LncRNA Microarrays.
  8. Altmetric Badge
    Chapter 7 Nuclear RNA Isolation and Sequencing.
  9. Altmetric Badge
    Chapter 8 Targeted LncRNA Sequencing with the SeqCap RNA Enrichment System.
  10. Altmetric Badge
    Chapter 9 ChIP-Seq: Library Preparation and Sequencing.
  11. Altmetric Badge
    Chapter 10 Stellaris(®) RNA Fluorescence In Situ Hybridization for the Simultaneous Detection of Immature and Mature Long Noncoding RNAs in Adherent Cells.
  12. Altmetric Badge
    Chapter 11 Simultaneous RNA-DNA FISH.
  13. Altmetric Badge
    Chapter 12 Visualizing Long Noncoding RNAs on Chromatin.
  14. Altmetric Badge
    Chapter 13 Non-isotopic Method for In Situ LncRNA Visualization and Quantitation.
  15. Altmetric Badge
    Chapter 14 Detection of Long Noncoding RNA Expression by Nonradioactive Northern Blots.
  16. Altmetric Badge
    Chapter 15 Assessment of In Vivo siRNA Delivery in Cancer Mouse Models.
  17. Altmetric Badge
    Chapter 16 Targeting Long Noncoding RNA with Antisense Oligonucleotide Technology as Cancer Therapeutics.
  18. Altmetric Badge
    Chapter 17 Characterization of Circular RNAs.
  19. Altmetric Badge
    Chapter 18 Methods for Characterization of Alternative RNA Splicing.
  20. Altmetric Badge
    Chapter 19 NONCODEv4: Annotation of Noncoding RNAs with Emphasis on Long Noncoding RNAs.
  21. Altmetric Badge
    Chapter 20 Computational Analysis of LncRNA from cDNA Sequences.
  22. Altmetric Badge
    Chapter 21 Analyzing MiRNA-LncRNA Interactions.
  23. Altmetric Badge
    Chapter 22 Long Noncoding RNAs: An Overview.
Attention for Chapter 20: Computational Analysis of LncRNA from cDNA Sequences.
Altmetric Badge

About this Attention Score

  • Average Attention Score compared to outputs of the same age
  • Average Attention Score compared to outputs of the same age and source

Mentioned by

twitter
3 X users

Citations

dimensions_citation
11 Dimensions

Readers on

mendeley
5 Mendeley
You are seeing a free-to-access but limited selection of the activity Altmetric has collected about this research output. Click here to find out more.
Chapter title
Computational Analysis of LncRNA from cDNA Sequences.
Chapter number 20
Book title
Long Non-Coding RNAs
Published in
Methods in molecular biology, January 2016
DOI 10.1007/978-1-4939-3378-5_20
Pubmed ID
Book ISBNs
978-1-4939-3376-1, 978-1-4939-3378-5
Authors

Boerner, Susan, McGinnis, Karen M, Susan Boerner, Karen M. McGinnis

Editors

Yi Feng, Lin Zhang

Abstract

Based on recent findings, long noncoding (lnc) RNAs represent a potential class of functional molecules within the cell. In this chapter we describe a computational scheme to identify and classify lncRNAs within maize from full-length cDNA sequences to designate subsets of lncRNAs for which biogenesis and regulatory mechanisms may be verified at the bench. We make use of the Coding Potential Calculator and specific Python scripts in our approach.

X Demographics

X Demographics

The data shown below were collected from the profiles of 3 X users who shared this research output. Click here to find out more about how the information was compiled.
Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 5 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
Unknown 5 100%

Demographic breakdown

Readers by professional status Count As %
Researcher 3 60%
Student > Ph. D. Student 2 40%
Readers by discipline Count As %
Neuroscience 2 40%
Agricultural and Biological Sciences 2 40%
Biochemistry, Genetics and Molecular Biology 1 20%
Attention Score in Context

Attention Score in Context

This research output has an Altmetric Attention Score of 1. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 03 January 2016.
All research outputs
#15,352,477
of 22,836,570 outputs
Outputs from Methods in molecular biology
#5,347
of 13,126 outputs
Outputs of similar age
#230,873
of 393,564 outputs
Outputs of similar age from Methods in molecular biology
#545
of 1,470 outputs
Altmetric has tracked 22,836,570 research outputs across all sources so far. This one is in the 22nd percentile – i.e., 22% of other outputs scored the same or lower than it.
So far Altmetric has tracked 13,126 research outputs from this source. They receive a mean Attention Score of 3.4. This one is in the 44th percentile – i.e., 44% of its peers scored the same or lower than it.
Older research outputs will score higher simply because they've had more time to accumulate mentions. To account for age we can compare this Altmetric Attention Score to the 393,564 tracked outputs that were published within six weeks on either side of this one in any source. This one is in the 32nd percentile – i.e., 32% of its contemporaries scored the same or lower than it.
We're also able to compare this research output to 1,470 others from the same source and published within six weeks on either side of this one. This one is in the 48th percentile – i.e., 48% of its contemporaries scored the same or lower than it.