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Systems Genetics

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Cover of 'Systems Genetics'

Table of Contents

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    Book Overview
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    Chapter 1 Resources for Systems Genetics
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    Chapter 2 Heterogeneous Stock Populations for Analysis of Complex Traits
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    Chapter 3 Mouse Genome Informatics (MGI): Resources for Mining Mouse Genetic, Genomic, and Biological Data in Support of Primary and Translational Research
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    Chapter 4 GeneNetwork: A Toolbox for Systems Genetics
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    Chapter 5 Complex Trait Analyses of the Collaborative Cross: Tools and Databases
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    Chapter 6 Integrative Functional Genomics for Systems Genetics in GeneWeaver.org
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    Chapter 7 A Suite of Tools for Biologists That Improve Accessibility and Visualization of Large Systems Genetics Datasets: Applications to the Hybrid Mouse Diversity Panel
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    Chapter 8 Expression QTLs Mapping and Analysis: A Bayesian Perspective
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    Chapter 9 Epigenetics and Control of RNAs
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    Chapter 10 Integrating Multidimensional Data Sources to Identify Genes Regulating Complex Phenotypes
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    Chapter 11 RNA-Seq in the Collaborative Cross
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    Chapter 12 QTL Mapping and Identification of Candidate Genes in DO Mice: A Use Case Model Derived from a Benzene Toxicity Experiment
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    Chapter 13 Visualization of Results from Systems Genetics Studies in Chromosomal Context
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    Chapter 14 Using Baseline Transcriptional Connectomes in Rat to Identify Genetic Pathways Associated with Predisposition to Complex Traits
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    Chapter 15 Precise Network Modeling of Systems Genetics Data Using the Bayesian Network Webserver
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    Chapter 16 Systems Genetics as a Tool to Identify Master Genetic Regulators in Complex Disease
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    Chapter 17 Genomic Control of Retinal Cell Number: Challenges, Protocol, and Results
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    Chapter 18 Systems Genetics Analysis to Identify the Genetic Modulation of a Glaucoma-Associated Gene
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    Chapter 19 Genetic Dissection of Variation in Hippocampal Intra- and Infrapyramidal Mossy Fibers in the Mouse
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    Chapter 20 Complex Genetics of Cardiovascular Traits in Mice: F2-Mapping of QTLs and Their Underlying Genes
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    Chapter 21 Systems Genetics of Liver Fibrosis
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    Chapter 22 Systems Genetics Analysis of Iron and Its Regulation in Brain and Periphery
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    Chapter 23 Systems Genetics of Obesity
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    Chapter 24 Social Interactions and Indirect Genetic Effects on Complex Juvenile and Adult Traits
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    Chapter 25 Complex Genetics of Behavior: BXDs in the Automated Home-Cage
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    Chapter 26 Integrative Analysis of Genetic, Genomic, and Phenotypic Data for Ethanol Behaviors: A Network-Based Pipeline for Identifying Mechanisms and Potential Drug Targets
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    Chapter 27 Dissection of Host Susceptibility to Bacterial Infections and Its Toxins
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    Chapter 28 The Collaborative Cross Resource for Systems Genetics Research of Infectious Diseases
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    Chapter 29 Using Systems Genetics to Understanding the Etiology of Complex Disease
Attention for Chapter 12: QTL Mapping and Identification of Candidate Genes in DO Mice: A Use Case Model Derived from a Benzene Toxicity Experiment
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Chapter title
QTL Mapping and Identification of Candidate Genes in DO Mice: A Use Case Model Derived from a Benzene Toxicity Experiment
Chapter number 12
Book title
Systems Genetics
Published in
Methods in molecular biology, January 2017
DOI 10.1007/978-1-4939-6427-7_12
Pubmed ID
Book ISBNs
978-1-4939-6425-3, 978-1-4939-6427-7
Authors

Dan Gatti, John E. French, Klaus Schughart

Editors

Klaus Schughart, Robert W. Williams

Abstract

Diversity Outbred (DO) mice are a multiparental advanced generation intercross population derived from eight inbred strains which are genetically very diverse. They are maintained as an outbred population using a randomized mating design. Thus DO mice represent an ideal population to map phenotypic traits. Here, we provide a case study in which male DO mice were exposed to benzene and phenotyped for the number of micronucleated reticulocytes. We provide step-by-step R scripts for the analysis of phenotypes, genotypes, mapping of resistance gene loci and identification of candidate genes.

Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 10 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
Unknown 10 100%

Demographic breakdown

Readers by professional status Count As %
Student > Ph. D. Student 2 20%
Professor 1 10%
Professor > Associate Professor 1 10%
Student > Bachelor 1 10%
Unknown 5 50%
Readers by discipline Count As %
Agricultural and Biological Sciences 2 20%
Biochemistry, Genetics and Molecular Biology 2 20%
Pharmacology, Toxicology and Pharmaceutical Science 1 10%
Unknown 5 50%