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Improved tomographic reconstruction of large-scale real-world data by filter optimization

Overview of attention for article published in Advanced Structural and Chemical Imaging, December 2016
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Title
Improved tomographic reconstruction of large-scale real-world data by filter optimization
Published in
Advanced Structural and Chemical Imaging, December 2016
DOI 10.1186/s40679-016-0033-y
Pubmed ID
Authors

Daniël M. Pelt, Vincent De Andrade

Abstract

In advanced tomographic experiments, large detector sizes and large numbers of acquired datasets can make it difficult to process the data in a reasonable time. At the same time, the acquired projections are often limited in some way, for example having a low number of projections or a low signal-to-noise ratio. Direct analytical reconstruction methods are able to produce reconstructions in very little time, even for large-scale data, but the quality of these reconstructions can be insufficient for further analysis in cases with limited data. Iterative reconstruction methods typically produce more accurate reconstructions, but take significantly more time to compute, which limits their usefulness in practice. In this paper, we present the application of the SIRT-FBP method to large-scale real-world tomographic data. The SIRT-FBP method is able to accurately approximate the simultaneous iterative reconstruction technique (SIRT) method by the computationally efficient filtered backprojection (FBP) method, using precomputed experiment-specific filters. We specifically focus on the many implementation details that are important for application on large-scale real-world data, and give solutions to common problems that occur with experimental data. We show that SIRT-FBP filters can be computed in reasonable time, even for large problem sizes, and that precomputed filters can be reused for future experiments. Reconstruction results are given for three different experiments, and are compared with results of popular existing methods. The results show that the SIRT-FBP method is able to accurately approximate iterative reconstructions of experimental data. Furthermore, they show that, in practice, the SIRT-FBP method can produce more accurate reconstructions than standard direct analytical reconstructions with popular filters, without increasing the required computation time.

Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 33 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
Unknown 33 100%

Demographic breakdown

Readers by professional status Count As %
Student > Ph. D. Student 10 30%
Researcher 7 21%
Student > Doctoral Student 2 6%
Student > Master 2 6%
Professor 1 3%
Other 2 6%
Unknown 9 27%
Readers by discipline Count As %
Engineering 9 27%
Physics and Astronomy 7 21%
Materials Science 4 12%
Unspecified 1 3%
Chemical Engineering 1 3%
Other 2 6%
Unknown 9 27%
Attention Score in Context

Attention Score in Context

This research output has an Altmetric Attention Score of 1. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 11 December 2016.
All research outputs
#15,402,296
of 22,912,409 outputs
Outputs from Advanced Structural and Chemical Imaging
#17
of 31 outputs
Outputs of similar age
#250,771
of 416,052 outputs
Outputs of similar age from Advanced Structural and Chemical Imaging
#4
of 5 outputs
Altmetric has tracked 22,912,409 research outputs across all sources so far. This one is in the 22nd percentile – i.e., 22% of other outputs scored the same or lower than it.
So far Altmetric has tracked 31 research outputs from this source. They typically receive a little more attention than average, with a mean Attention Score of 6.9. This one scored the same or higher as 14 of them.
Older research outputs will score higher simply because they've had more time to accumulate mentions. To account for age we can compare this Altmetric Attention Score to the 416,052 tracked outputs that were published within six weeks on either side of this one in any source. This one is in the 30th percentile – i.e., 30% of its contemporaries scored the same or lower than it.
We're also able to compare this research output to 5 others from the same source and published within six weeks on either side of this one.