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Plant Genomics

Overview of attention for book
Cover of 'Plant Genomics'

Table of Contents

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    Book Overview
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    Chapter 1 CRISPR/Cas-Mediated In Planta Gene Targeting
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    Chapter 2 User Guide for the LORE1 Insertion Mutant Resource
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    Chapter 3 Enabling Reverse Genetics in Medicago truncatula Using High-Throughput Sequencing for Tnt1 Flanking Sequence Recovery
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    Chapter 4 The Generation of Doubled Haploid Lines for QTL Mapping
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    Chapter 5 Assessing Distribution and Variation of Genome-Wide DNA Methylation Using Short-Read Sequencing
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    Chapter 6 Circular Chromosome Conformation Capture in Plants
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    Chapter 7 Genome-Wide Profiling of Histone Modifications and Histone Variants in Arabidopsis thaliana and Marchantia polymorpha
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    Chapter 8 Tissue-Specific Transcriptome Profiling in Arabidopsis Roots
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    Chapter 9 Sample Preparation Protocols for Protein Abundance, Acetylome, and Phosphoproteome Profiling of Plant Tissues
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    Chapter 10 Automated High-Throughput Root Phenotyping of Arabidopsis thaliana Under Nutrient Deficiency Conditions
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    Chapter 11 Large-Scale Phenotyping of Root Traits in the Model Legume Lotus japonicus
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    Chapter 12 Long-Term Confocal Imaging of Arabidopsis thaliana Roots for Simultaneous Quantification of Root Growth and Fluorescent Signals
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    Chapter 13 Identification of Protein–DNA Interactions Using Enhanced Yeast One-Hybrid Assays and a Semiautomated Approach
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    Chapter 14 Mapping Protein-Protein Interaction Using High-Throughput Yeast 2-Hybrid
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    Chapter 15 Mapping Protein–Protein Interactions Using Affinity Purification and Mass Spectrometry
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    Chapter 16 Measuring Protein Movement, Oligomerization State, and Protein-Protein Interaction in Arabidopsis Roots Using Scanning Fluorescence Correlation Spe..
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    Chapter 17 Studying Protein–Protein Interactions In Planta Using Advanced Fluorescence Microscopy
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    Chapter 18 Chemiluminescence-Based Detection of Peptide Activity and Peptide-Receptor Binding in Plants
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    Chapter 19 Application of Chemical Genomics to Plant–Bacteria Communication: A High-Throughput System to Identify Novel Molecules Modulating the Induction of Bacterial Virulence Genes by Plant Signals
Attention for Chapter 7: Genome-Wide Profiling of Histone Modifications and Histone Variants in Arabidopsis thaliana and Marchantia polymorpha
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Chapter title
Genome-Wide Profiling of Histone Modifications and Histone Variants in Arabidopsis thaliana and Marchantia polymorpha
Chapter number 7
Book title
Plant Genomics
Published in
Methods in molecular biology, April 2017
DOI 10.1007/978-1-4939-7003-2_7
Pubmed ID
Book ISBNs
978-1-4939-7001-8, 978-1-4939-7003-2
Authors

Yelagandula, Ramesh, Osakabe, Akihisa, Axelsson, Elin, Berger, Frederic, Kawashima, Tomokazu, Ramesh Yelagandula, Akihisa Osakabe, Elin Axelsson, Frederic Berger, Tomokazu Kawashima

Editors

Wolfgang Busch

Abstract

Histone modifications and histone variants barcode the genome and play major roles in epigenetic regulations. Chromatin immunoprecipitation (ChIP) coupled with next-generation sequencing (NGS) is a well-established method to investigate the landscape of epigenetic marks at a genomic level. Here, we describe procedures for conducting ChIP, subsequent NGS library construction, and data analysis on histone modifications and histone variants in Arabidopsis thaliana. We also describe an optimized nuclear isolation procedure to prepare chromatin for ChIP in the liverwort, Marchantia polymorpha, which is the emerging model plant ideal for evolutionary studies.

Twitter Demographics

The data shown below were collected from the profile of 1 tweeter who shared this research output. Click here to find out more about how the information was compiled.

Mendeley readers

The data shown below were compiled from readership statistics for 20 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
Norway 1 5%
Unknown 19 95%

Demographic breakdown

Readers by professional status Count As %
Researcher 5 25%
Student > Bachelor 4 20%
Student > Ph. D. Student 3 15%
Student > Doctoral Student 2 10%
Librarian 1 5%
Other 2 10%
Unknown 3 15%
Readers by discipline Count As %
Biochemistry, Genetics and Molecular Biology 8 40%
Agricultural and Biological Sciences 8 40%
Unknown 4 20%

Attention Score in Context

This research output has an Altmetric Attention Score of 1. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 26 April 2017.
All research outputs
#8,465,349
of 9,730,393 outputs
Outputs from Methods in molecular biology
#5,048
of 7,433 outputs
Outputs of similar age
#218,620
of 261,679 outputs
Outputs of similar age from Methods in molecular biology
#17
of 35 outputs
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We're also able to compare this research output to 35 others from the same source and published within six weeks on either side of this one. This one is in the 1st percentile – i.e., 1% of its contemporaries scored the same or lower than it.