Protein Structure Prediction

Chapter 1 Protein Structure Modeling with MODELLER

Chapter 2 Protein Structure Prediction

Chapter 3 The MULTICOM Protein Tertiary Structure Prediction System

Chapter 4 Modeling of Protein Side-Chain Conformations with RASP

Chapter 5 Direct Coupling Analysis for Protein Contact Prediction

Chapter 6 ITScorePro: An Efficient Scoring Program for Evaluating the Energy Scores of Protein Structures for Structure Prediction

Chapter 7 Assessing the Quality of Modelled 3D Protein Structures Using the ModFOLD Server

Chapter 8 3D-SURFER 2.0: Web Platform for Real-Time Search and Characterization of Protein Surfaces.

Chapter 9 SPOT-Seq-RNA: Predicting Protein–RNA Complex Structure and RNA-Binding Function by Fold Recognition and Binding Affinity Prediction

Chapter 10 Protein Structure Prediction

Chapter 11 Prediction of Intrinsic Disorder in Proteins Using MFDp2

Chapter 12 Modeling Protein–Protein Complexes Using the HADDOCK Webserver “Modeling Protein Complexes with HADDOCK”

Chapter 14 DOCK/PIERR: Web Server for Structure Prediction of Protein–Protein Complexes

Chapter 15 Pairwise and Multimeric Protein-Protein Docking Using the LZerD Program Suite.

Chapter 16 Protocols for Efficient Simulations of Long-Time Protein Dynamics Using Coarse-Grained CABS Model