@michelnivard @patrickaturley This one: https://t.co/sHPRzoc6Y6 . But that should lead to an estimated h2g of 0, maybe sampling variance or weird standard errors are doing the rest?
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@RoshniAPatel Check out this good introduction of LMM https://t.co/9MOorYEyju (not in the context of GWAS though). For paper in the context of GWAS, https://t.co/2JJ0wrlfEB can be a good start.
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@IanDworkin @jasongallant @SpicyBotrytis @DavidBLowry @gbradburd The standard LMM effectively includes all PC's as covariates and then regularizes their effects https://t.co/HFrWFFpPOD. Regularizing the effects of the SNP you're testing itself is less comm