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Algorithms in Bioinformatics

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Cover of 'Algorithms in Bioinformatics'

Table of Contents

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    Book Overview
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    Chapter 1 Measures of Codon Bias in Yeast, the tRNA Pairing Index and Possible DNA Repair Mechanisms
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    Chapter 2 Decomposing Metabolomic Isotope Patterns
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    Chapter 3 A Method to Design Standard HMMs with Desired Length Distribution for Biological Sequence Analysis
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    Chapter 4 Efficient Model-Based Clustering for LC-MS Data
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    Chapter 5 A Bayesian Algorithm for Reconstructing Two-Component Signaling Networks
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    Chapter 6 Linear-Time Haplotype Inference on Pedigrees Without Recombinations
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    Chapter 7 Phylogenetic Network Inferences Through Efficient Haplotyping
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    Chapter 8 Beaches of Islands of Tractability: Algorithms for Parsimony and Minimum Perfect Phylogeny Haplotyping Problems
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    Chapter 9 On the Complexity of SNP Block Partitioning Under the Perfect Phylogeny Model
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    Chapter 10 How Many Transcripts Does It Take to Reconstruct the Splice Graph?
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    Chapter 11 Multiple Structure Alignment and Consensus Identification for Proteins
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    Chapter 12 Procrastination Leads to Efficient Filtration for Local Multiple Alignment
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    Chapter 13 Controlling Size When Aligning Multiple Genomic Sequences with Duplications
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    Chapter 14 Reducing Distortion in Phylogenetic Networks
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    Chapter 15 Imputing Supertrees and Supernetworks from Quartets
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    Chapter 16 A Unifying View of Genome Rearrangements
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    Chapter 17 Efficient Sampling of Transpositions and Inverted Transpositions for Bayesian MCMC
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    Chapter 18 Alignment with Non-overlapping Inversions in O(n 3)-Time
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    Chapter 19 Accelerating Motif Discovery: Motif Matching on Parallel Hardware
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    Chapter 20 Algorithms in Bioinformatics
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    Chapter 21 Protein Side-Chain Placement Through MAP Estimation and Problem-Size Reduction
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    Chapter 22 On the Complexity of the Crossing Contact Map Pattern Matching Problem
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    Chapter 23 A Fuzzy Dynamic Programming Approach to Predict RNA Secondary Structure
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    Chapter 24 Landscape Analysis for Protein-Folding Simulation in the H-P Model
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    Chapter 25 Rapid ab initio RNA Folding Including Pseudoknots Via Graph Tree Decomposition
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    Chapter 26 Flux-Based vs. Topology-Based Similarity of Metabolic Genes
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    Chapter 27 Combinatorial Methods for Disease Association Search and Susceptibility Prediction
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    Chapter 28 Integer Linear Programs for Discovering Approximate Gene Clusters
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    Chapter 29 Approximation Algorithms for Bi-clustering Problems
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    Chapter 30 Improving the Layout of Oligonucleotide Microarrays: Pivot Partitioning
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    Chapter 31 Accelerating the Computation of Elementary Modes Using Pattern Trees
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    Chapter 32 A Linear-Time Algorithm for Studying Genetic Variation
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    Chapter 33 New Constructive Heuristics for DNA Sequencing by Hybridization
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    Chapter 34 Optimal Probing Patterns for Sequencing by Hybridization
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    Chapter 35 Gapped Permutation Patterns for Comparative Genomics
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    Chapter 36 Segmentation with an Isochore Distribution
Attention for Chapter 17: Efficient Sampling of Transpositions and Inverted Transpositions for Bayesian MCMC
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Chapter title
Efficient Sampling of Transpositions and Inverted Transpositions for Bayesian MCMC
Chapter number 17
Book title
Algorithms in Bioinformatics
Published by
Springer, Berlin, Heidelberg, September 2006
DOI 10.1007/11851561_17
Book ISBNs
978-3-54-039583-6, 978-3-54-039584-3
Authors

István Miklós, Timothy Brooks Paige, Péter Ligeti

Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 1 Mendeley reader of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
Unknown 1 100%

Demographic breakdown

Readers by professional status Count As %
Professor > Associate Professor 1 100%
Readers by discipline Count As %
Computer Science 1 100%