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Research in Computational Molecular Biology

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Cover of 'Research in Computational Molecular Biology'

Table of Contents

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    Book Overview
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    Chapter 1 Reconciliation Revisited: Handling Multiple Optima When Reconciling with Duplication, Transfer, and Loss
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    Chapter 2 SEME: A Fast Mapper of Illumina Sequencing Reads with Statistical Evaluation
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    Chapter 3 Dissecting Cancer Heterogeneity with a Probabilistic Genotype-Phenotype Model
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    Chapter 4 eALPS: Estimating Abundance Levels in Pooled Sequencing Using Available Genotyping Data
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    Chapter 5 Analysis of Metabolic Evolution in Bacteria Using Whole-Genome Metabolic Models
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    Chapter 6 Detecting Protein Conformational Changes in Interactions via Scaling Known Structures
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    Chapter 7 IPED: Inheritance Path Based Pedigree Reconstruction Algorithm Using Genotype Data
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    Chapter 8 An Optimal Algorithm for Building the Majority Rule Consensus Tree
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    Chapter 9 UniNovo : A Universal Tool for de Novo Peptide Sequencing
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    Chapter 10 Efficiently Identifying Significant Associations in Genome-Wide Association Studies
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    Chapter 11 Identification of Ultramodified Proteins Using Top-Down Spectra
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    Chapter 12 Research in Computational Molecular Biology
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    Chapter 13 Assembling Genomes and Mini-metagenomes from Highly Chimeric Reads
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    Chapter 14 Inferring Intra-tumor Heterogeneity from High-Throughput DNA Sequencing Data
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    Chapter 15 NP-MuScL: Unsupervised Global Prediction of Interaction Networks from Multiple Data Sources
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    Chapter 16 High Resolution Modeling of Chromatin Interactions
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    Chapter 17 A Linear Inside-Outside Algorithm for Correcting Sequencing Errors in Structured RNAs
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    Chapter 18 An Accurate Method for Inferring Relatedness in Large Datasets of Unphased Genotypes via an Embedded Likelihood-Ratio Test
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    Chapter 19 Learning Natural Selection from the Site Frequency Spectrum
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    Chapter 20 Considering Unknown Unknowns - Reconstruction of Non-confoundable Causal Relations in Biological Networks
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    Chapter 21 Inference of Tumor Phylogenies with Improved Somatic Mutation Discovery
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    Chapter 22 Abstract: Using the Fast Fourier Transform to Accelerate the Computational Search for RNA Conformational Switches
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    Chapter 23 MethylCRF, an Algorithm for Estimating Absolute Methylation Levels at Single CpG Resolution from Methylation Enrichment and Restriction Enzyme Sequencing Methods
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    Chapter 24 Counting Motifs in the Entire Biological Network from Noisy and Incomplete Data
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    Chapter 25 Research in Computational Molecular Biology
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    Chapter 26 Genome-Wide Survival Analysis of Somatic Mutations in Cancer
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    Chapter 27 Spectral Library Generating Function for Assessing Spectrum-Spectrum Match Significance
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    Chapter 28 SPARSE: Quadratic Time Simultaneous Alignment and Folding of RNAs without Sequence-Based Heuristics
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    Chapter 29 An Algorithm for Constructing Parsimonious Hybridization Networks with Multiple Phylogenetic Trees
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    Chapter 30 Fast and Accurate Calculation of Protein Depth by Euclidean Distance Transform
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    Chapter 31 Inference of Spatial Organizations of Chromosomes Using Semi-definite Embedding Approach and Hi-C Data
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    Chapter 32 Boosting Prediction Performance of Protein-Protein Interaction Hot Spots by Using Structural Neighborhood Properties
Attention for Chapter 17: A Linear Inside-Outside Algorithm for Correcting Sequencing Errors in Structured RNAs
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Chapter title
A Linear Inside-Outside Algorithm for Correcting Sequencing Errors in Structured RNAs
Chapter number 17
Book title
Research in Computational Molecular Biology
Published by
Springer, Berlin, Heidelberg, April 2013
DOI 10.1007/978-3-642-37195-0_17
Book ISBNs
978-3-64-237194-3, 978-3-64-237195-0
Authors

Vladimir Reinharz, Yann Ponty, Jérôme Waldispühl

Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 2 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
Unknown 2 100%

Demographic breakdown

Readers by professional status Count As %
Professor > Associate Professor 1 50%
Student > Bachelor 1 50%
Readers by discipline Count As %
Computer Science 1 50%
Agricultural and Biological Sciences 1 50%