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CRISPR

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Cover of 'CRISPR'

Table of Contents

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    Book Overview
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    Chapter 1 Investigating CRISPR RNA Biogenesis and Function Using RNA-seq.
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    Chapter 2 In Vitro Co-reconstitution of Cas Protein Complexes.
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    Chapter 3 Analysis of CRISPR Pre-crRNA Cleavage
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    Chapter 4 Annotation and Classification of CRISPR-Cas Systems.
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    Chapter 5 Computational Detection of CRISPR/crRNA Targets
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    Chapter 6 High-Throughput CRISPR Typing of Mycobacterium tuberculosis Complex and Salmonella enterica Serotype Typhimurium.
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    Chapter 7 Spacer-Based Macroarrays for CRISPR Genotyping
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    Chapter 8 Analysis of crRNA Using Liquid Chromatography Electrospray Ionization Mass Spectrometry (LC ESI MS).
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    Chapter 9 Rapid Multiplex Creation of Escherichia coli Strains Capable of Interfering with Phage Infection Through CRISPR.
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    Chapter 10 Exploring CRISPR Interference by Transformation with Plasmid Mixtures: Identification of Target Interference Motifs in Escherichia coli
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    Chapter 11 CRISPR
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    Chapter 12 Expression and Purification of the CMR (Type III-B) Complex in Sulfolobus solfataricus.
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    Chapter 13 Procedures for Generating CRISPR Mutants with Novel Spacers Acquired from Viruses or Plasmids.
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    Chapter 14 Archaeal Viruses of the Sulfolobales: Isolation, Infection, and CRISPR Spacer Acquisition.
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    Chapter 15 Using the CRISPR-Cas System to Positively Select Mutants in Genes Essential for Its Function.
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    Chapter 16 Analysis of nuclease activity of cas1 proteins against complex DNA substrates.
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    Chapter 17 Characterizing Metal-Dependent Nucleases of CRISPR-Cas Prokaryotic Adaptive Immunity Systems.
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    Chapter 18 Cas3 Nuclease–Helicase Activity Assays
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    Chapter 19 Chemical and Enzymatic Footprint Analyses of R-Loop Formation by Cascade-crRNA Complex
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    Chapter 20 Creation and Analysis of a Virome: Using CRISPR Spacers.
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    Chapter 21 Targeted Mutagenesis in Zebrafish Using CRISPR RNA-Guided Nucleases.
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    Chapter 22 Precise Genome Editing of Drosophila with CRISPR RNA-Guided Cas9.
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    Chapter 23 Targeted Transcriptional Repression in Bacteria Using CRISPR Interference (CRISPRi).
Attention for Chapter 11: CRISPR
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Chapter title
CRISPR
Chapter number 11
Book title
CRISPR
Published in
Methods in molecular biology, January 2015
DOI 10.1007/978-1-4939-2687-9_11
Pubmed ID
Book ISBNs
978-1-4939-2686-2, 978-1-4939-2687-9
Authors

Künne, Tim, Westra, Edze R, Brouns, Stan J J, Westra, Edze R., Brouns, Stan J. J., Tim Künne, Edze R. Westra, Stan J. J. Brouns

Editors

Magnus Lundgren, Emmanuelle Charpentier, Peter C. Fineran

Abstract

The Electrophoretic Mobility Shift Assay is a straightforward and inexpensive method for the determination and quantification of protein-nucleic acid interactions. It relies on the different mobility of free and protein-bound nucleic acid in a gel matrix during electrophoresis. Nucleic acid affinities of crRNA-Cas complexes can be quantified by calculating the dissociation constant (K d). Here, we describe how two types of EMSA assays are performed using the Cascade ribonucleoprotein complex from Escherichia coli as an example.

Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 27 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
Unknown 27 100%

Demographic breakdown

Readers by professional status Count As %
Student > Ph. D. Student 7 26%
Student > Master 5 19%
Researcher 5 19%
Student > Bachelor 3 11%
Professor > Associate Professor 2 7%
Other 1 4%
Unknown 4 15%
Readers by discipline Count As %
Biochemistry, Genetics and Molecular Biology 11 41%
Agricultural and Biological Sciences 10 37%
Immunology and Microbiology 1 4%
Chemistry 1 4%
Unknown 4 15%