Table of Contents

1. Altmetric Badge
   Book Overview
2. Altmetric Badge
   Chapter 1 Trie-based Apriori Motif Discovery Approach
3. Altmetric Badge
   Chapter 2 Inapproximability of (1,2)-Exemplar Distance
4. Altmetric Badge
   Chapter 3 A Mixed Integer Programming Model for the Parsimonious Loss of Heterozygosity Problem
5. Altmetric Badge
   Chapter 4 Reconstruction of Transcription Regulatory Networks by Stability-Based Network Component Analysis
6. Altmetric Badge
   Chapter 5 A Transcript Perspective on Evolution
7. Altmetric Badge
   Chapter 6 A Fast Algorithm for Computing the Quartet Distance for Large Sets of Evolutionary Trees
8. Altmetric Badge
   Chapter 7 Error Propagation in Sparse Linear Systems with Peptide-Protein Incidence Matrices
9. Altmetric Badge
   Chapter 8 Models and Algorithmic Tools for Computational Processes in Cellular Biology: Recent Developments and Future Directions
10. Altmetric Badge
    Chapter 9 Identifying Rogue Taxa through Reduced Consensus: NP-Hardness and Exact Algorithms
11. Altmetric Badge
    Chapter 10 Analytics Approaches for the Era of 10,000* Genomes *and Counting
12. Altmetric Badge
    Chapter 11 GTP Supertrees from Unrooted Gene Trees: Linear Time Algorithms for NNI Based Local Searches
13. Altmetric Badge
    Chapter 12 A Robinson-Foulds Measure to Compare Unrooted Trees with Rooted Trees
14. Altmetric Badge
    Chapter 13 P-Binder: A System for the Protein-Protein Binding Sites Identification
15. Altmetric Badge
    Chapter 14 Non-identifiable Pedigrees and a Bayesian Solution
16. Altmetric Badge
    Chapter 15 Iterative Piecewise Linear Regression to Accurately Assess Statistical Significance in Batch Confounded Differential Expression Analysis
17. Altmetric Badge
    Chapter 16 Reconstruction of Network Evolutionary History from Extant Network Topology and Duplication History
18. Altmetric Badge
    Chapter 17 POPE: Pipeline of Parentally-Biased Expression
19. Altmetric Badge
    Chapter 18 On Optimizing the Non-metric Similarity Search in Tandem Mass Spectra by Clustering
20. Altmetric Badge
    Chapter 19 On the Comparison of Sets of Alternative Transcripts
21. Altmetric Badge
    Chapter 20 MURPAR: A Fast Heuristic for Inferring Parsimonious Phylogenetic Networks from Multiple Gene Trees
22. Altmetric Badge
    Chapter 21 Large Scale Ranking and Repositioning of Drugs with Respect to DrugBank Therapeutic Categories
23. Altmetric Badge
    Chapter 22 Score Based Aggregation of microRNA Target Orderings
24. Altmetric Badge
    Chapter 23 Modeling Complex Diseases Using Discriminative Network Fragments
25. Altmetric Badge
    Chapter 24 Novel Multi-sample Scheme for Inferring Phylogenetic Markers from Whole Genome Tumor Profiles
26. Altmetric Badge
    Chapter 25 Algorithms for Knowledge-Enhanced Supertrees
27. Altmetric Badge
    Chapter 26 Improvement of BLASTp on the FPGA-Based High-Performance Computer RIVYERA
28. Altmetric Badge
    Chapter 27 A Polynomial Time Solution for Protein Chain Pair Simplification under the Discrete Fréchet Distance
29. Altmetric Badge
    Chapter 28 Designing RNA Secondary Structures in Coding Regions
30. Altmetric Badge
    Chapter 29 Phylogenetic Tree Reconstruction with Protein Linkage
31. Altmetric Badge
    Chapter 30 Protein Structure Prediction and Clustering Using MUFOLD
32. Altmetric Badge
    Chapter 31 Computational Modeling of Mammalian Promoters