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RNA Nanostructures

Overview of attention for book
Cover of 'RNA Nanostructures'

Table of Contents

  1. Altmetric Badge
    Book Overview
  2. Altmetric Badge
    Chapter 1 A New Method to Predict Ion Effects in RNA Folding
  3. Altmetric Badge
    Chapter 2 Computational Generation of RNA Nanorings
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    Chapter 3 Protocols for Molecular Dynamics Simulations of RNA Nanostructures
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    Chapter 4 Rolling Circle Transcription for the Self-Assembly of Multimeric RNAi Structures and Its Applications in Nanomedicine
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    Chapter 5 Computational Prediction of the Immunomodulatory Potential of RNA Sequences
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    Chapter 6 Cotranscriptional Production of Chemically Modified RNA Nanoparticles
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    Chapter 7 Supported Fluid Lipid Bilayer as a Scaffold to Direct Assembly of RNA Nanostructures
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    Chapter 8 Evaluation of Thermal Stability of RNA Nanoparticles by Temperature Gradient Gel Electrophoresis (TGGE) in Native Condition
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    Chapter 9 Design and Crystallography of Self-Assembling RNA Nanostructures
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    Chapter 10 X-Aptamer Selection and Validation
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    Chapter 11 Design and Preparation of Aptamer–siRNA Chimeras (AsiCs) for Targeted Cancer Therapy
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    Chapter 12 Cellular Delivery of siRNAs Using Bolaamphiphiles
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    Chapter 13 Preparation and Optimization of Lipid-Like Nanoparticles for mRNA Delivery
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    Chapter 14 Chitosan Nanoparticles for miRNA Delivery
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    Chapter 15 Synthesis of PLGA–Lipid Hybrid Nanoparticles for siRNA Delivery Using the Emulsion Method PLGA-PEG–Lipid Nanoparticles for siRNA Delivery
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    Chapter 16 Oxime Ether Lipids as Transfection Agents: Assembly and Complexation with siRNA
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    Chapter 17 Polycationic Probe-Guided Nanopore Single-Molecule Counter for Selective miRNA Detection
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    Chapter 18 Intracellular Reassociation of RNA–DNA Hybrids that Activates RNAi in HIV-Infected Cells
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    Chapter 19 Construction and In Vivo Testing of Prokaryotic Riboregulators
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    Chapter 20 Preparation of a Conditional RNA Switch
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    Chapter 21 Rational Engineering of a Modular Group I Ribozyme to Control Its Activity by Self-Dimerization
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    Chapter 22 CRISPR-Cas RNA Scaffolds for Transcriptional Programming in Yeast
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    Chapter 23 Using Planar Phi29 pRNA Three-Way Junction to Control Size and Shape of RNA Nanoparticles for Biodistribution Profiling in Mice
Attention for Chapter 2: Computational Generation of RNA Nanorings
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About this Attention Score

  • Good Attention Score compared to outputs of the same age (67th percentile)
  • High Attention Score compared to outputs of the same age and source (91st percentile)

Mentioned by

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7 X users

Citations

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4 Dimensions

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4 Mendeley
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Chapter title
Computational Generation of RNA Nanorings
Chapter number 2
Book title
RNA Nanostructures
Published in
Methods in molecular biology, July 2017
DOI 10.1007/978-1-4939-7138-1_2
Pubmed ID
Book ISBNs
978-1-4939-7137-4, 978-1-4939-7138-1
Authors

Rishabh Sharan, Eckart Bindewald, Wojciech K. Kasprzak, Bruce A. Shapiro

Abstract

A variety of designed RNA ring structures (ranging from triangles to hexagonal rings) have been reported in the scientific literature. Designing self-assembling RNA ring structures from structural motifs is, however, a nontrivial problem as there are many combinations of motifs and linking helices. Moreover, most combinations of motifs and linker helices will not lead to ring closure. A solution to this problem was recently published using a "design-by-catalog" approach where motif combinations that lead to rings are precomputed and tabulated. Here we present a web-browser based workflow for creating RNA rings using Galaxy, a web-based platform that can be used for workflow management. An example of how these RNA rings are generated and processed to create a 3D model of the ring is discussed.

X Demographics

X Demographics

The data shown below were collected from the profiles of 7 X users who shared this research output. Click here to find out more about how the information was compiled.
Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 4 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
Unknown 4 100%

Demographic breakdown

Readers by professional status Count As %
Student > Ph. D. Student 1 25%
Professor > Associate Professor 1 25%
Student > Bachelor 1 25%
Researcher 1 25%
Readers by discipline Count As %
Computer Science 2 50%
Biochemistry, Genetics and Molecular Biology 1 25%
Mathematics 1 25%
Attention Score in Context

Attention Score in Context

This research output has an Altmetric Attention Score of 5. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 16 September 2018.
All research outputs
#6,398,758
of 22,990,068 outputs
Outputs from Methods in molecular biology
#1,929
of 13,152 outputs
Outputs of similar age
#102,152
of 314,579 outputs
Outputs of similar age from Methods in molecular biology
#23
of 270 outputs
Altmetric has tracked 22,990,068 research outputs across all sources so far. This one has received more attention than most of these and is in the 72nd percentile.
So far Altmetric has tracked 13,152 research outputs from this source. They receive a mean Attention Score of 3.4. This one has done well, scoring higher than 85% of its peers.
Older research outputs will score higher simply because they've had more time to accumulate mentions. To account for age we can compare this Altmetric Attention Score to the 314,579 tracked outputs that were published within six weeks on either side of this one in any source. This one has gotten more attention than average, scoring higher than 67% of its contemporaries.
We're also able to compare this research output to 270 others from the same source and published within six weeks on either side of this one. This one has done particularly well, scoring higher than 91% of its contemporaries.