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mRNA Processing

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Cover of 'mRNA Processing'

Table of Contents

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    Book Overview
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    Chapter 1 Detection and Identification of Uncapped RNA by Ligation-Mediated Reverse Transcription Polymerase Chain Reaction
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    Chapter 2 Preparation of Splicing Competent Nuclear Extract from Mammalian Cells and In Vitro Pre-mRNA Splicing Assay
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    Chapter 3 Single-Molecule Analysis of Pre-mRNA Splicing with Colocalization Single-Molecule Spectroscopy (CoSMoS)
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    Chapter 4 In Vitro Modulation of Endogenous Alternative Splicing Using Splice-Switching Antisense Oligonucleotides
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    Chapter 5 Purification of mRNA Processing Complexes Using an RNA Affinity Approach
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    Chapter 6 Polyadenylation Site-Based Analysis of Transcript Expression by 3′READS+
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    Chapter 7 Comprehensive Identification of mRNA Polyadenylation Sites by PAPERCLIP
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    Chapter 8 Microinjection and Fluorescence In Situ Hybridization Assay for Studying mRNA Export in Mammalian Cells
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    Chapter 9 Methods for the Detection of Adenosine-to-Inosine Editing Events in Cellular RNA
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    Chapter 10 Using RNA-Seq to Discover Genetic Polymorphisms That Produce Hidden Splice Variants
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    Chapter 11 Inducible Expression of Eukaryotic Circular RNAs from Plasmids
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    Chapter 12 Methods for Extraction of RNA, Proteins, or Protein Complexes from Subcellular Compartments of Eukaryotic Cells
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    Chapter 13 Isolation of Newly Transcribed RNA Using the Metabolic Label 4-Thiouridine
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    Chapter 14 Robust, Cost-Effective Profiling of RNA Binding Protein Targets with Single-end Enhanced Crosslinking and Immunoprecipitation (seCLIP)
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    Chapter 15 Purification of Transcript-Specific mRNP Complexes Formed In Vivo from Saccharomyces cerevisiae
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    Chapter 16 A Cell-Based High-Throughput Method for Identifying Modulators of Alternative Splicing
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    Chapter 17 Genome-Wide RNAi Screens for RNA Processing Events in Drosophila melanogaster S2 Cells
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    Chapter 18 Assaying RNA Structure Inside Living Cells with SHAPE
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    Chapter 19 Erratum to: Robust, Cost-Effective Profiling of RNA Binding Protein Targets with Single-end Enhanced Crosslinking and Immunoprecipitation (seCLIP)
Attention for Chapter 12: Methods for Extraction of RNA, Proteins, or Protein Complexes from Subcellular Compartments of Eukaryotic Cells
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Chapter title
Methods for Extraction of RNA, Proteins, or Protein Complexes from Subcellular Compartments of Eukaryotic Cells
Chapter number 12
Book title
mRNA Processing
Published in
Methods in molecular biology, January 2017
DOI 10.1007/978-1-4939-7204-3_12
Pubmed ID
Book ISBNs
978-1-4939-7203-6, 978-1-4939-7204-3
Authors

Kyu-Hyeon Yeom, Andrey Damianov

Abstract

Eukaryotic organelles or subcellular compartments can be selectively isolated based on their physical density and their stability in the presence of nonionic detergents. This chapter describes a protocol for the preparation of cytoplasm, nucleoplasm, and chromatin, in addition to isolation of RNA and proteins from these fractions. Proteins and protein complexes stably associated with chromatin and other high molecular weight nuclear components can be extracted under non-denaturing conditions by enzymatic digestion of RNA and DNA. The chapter also includes a detailed extraction protocol from highly purified nuclei.

Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 8 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
Unknown 8 100%

Demographic breakdown

Readers by professional status Count As %
Student > Master 4 50%
Student > Doctoral Student 2 25%
Student > Ph. D. Student 1 13%
Student > Bachelor 1 13%
Readers by discipline Count As %
Biochemistry, Genetics and Molecular Biology 5 63%
Agricultural and Biological Sciences 2 25%
Unknown 1 13%