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Bacteriophages

Overview of attention for book
Cover of 'Bacteriophages'

Table of Contents

  1. Altmetric Badge
    Book Overview
  2. Altmetric Badge
    Chapter 1 Basic Phage Mathematics
  3. Altmetric Badge
    Chapter 2 Analysis of Host-Takeover During SPO1 Infection of Bacillus subtilis
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    Chapter 3 Practical Advice on the One-Step Growth Curve
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    Chapter 4 Iron Chloride Flocculation of Bacteriophages from Seawater
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    Chapter 5 Purification of Bacteriophages Using Anion-Exchange Chromatography
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    Chapter 6 Encapsulation Strategies of Bacteriophage (Felix O1) for Oral Therapeutic Application
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    Chapter 7 Encapsulation of Listeria Phage A511 by Alginate to Improve Its Thermal Stability
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    Chapter 8 Application of a Virucidal Agent to Avoid Overestimation of Phage Kill During Phage Decontamination Assays on Ready-to-Eat Meats
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    Chapter 9 Sequencing, Assembling, and Finishing Complete Bacteriophage Genomes
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    Chapter 10 Identification of DNA Base Modifications by Means of Pacific Biosciences RS Sequencing Technology
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    Chapter 11 Analyzing Genome Termini of Bacteriophage Through High-Throughput Sequencing
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    Chapter 12 Amplification for Whole Genome Sequencing of Bacteriophages from Single Isolated Plaques Using SISPA
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    Chapter 13 Genome Sequencing of dsDNA-Containing Bacteriophages Directly from a Single Plaque
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    Chapter 14 Preparing cDNA Libraries from Lytic Phage-Infected Cells for Whole Transcriptome Analysis by RNA-Seq
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    Chapter 15 Essential Steps in Characterizing Bacteriophages: Biology, Taxonomy, and Genome Analysis
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    Chapter 16 Annotation of Bacteriophage Genome Sequences Using DNA Master: An Overview
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    Chapter 17 Phage Genome Annotation Using the RAST Pipeline
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    Chapter 18 Visualization of Phage Genomic Data: Comparative Genomics and Publication-Quality Diagrams
  20. Altmetric Badge
    Chapter 19 Transposable Bacteriophages as Genetic Tools
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    Chapter 20 Applications of the Bacteriophage Mu In Vitro Transposition Reaction and Genome Manipulation via Electroporation of DNA Transposition Complexes
  22. Altmetric Badge
    Chapter 21 Use of RP4::Mini-Mu for Gene Transfer
  23. Altmetric Badge
    Chapter 22 Muprints and Whole Genome Insertion Scans: Methods for Investigating Chromosome Accessibility and DNA Dynamics using Bacteriophage Mu
Attention for Chapter 1: Basic Phage Mathematics
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Chapter title
Basic Phage Mathematics
Chapter number 1
Book title
Bacteriophages
Published in
Methods in molecular biology, January 2018
DOI 10.1007/978-1-4939-7343-9_1
Pubmed ID
Book ISBNs
978-1-4939-7341-5, 978-1-4939-7343-9
Authors

Stephen T. Abedon, Tena I. Katsaounis, Abedon, Stephen T., Katsaounis, Tena I.

Abstract

Basic mathematical descriptions are useful in phage ecology, applied phage ecology such as in the course of phage therapy, and also toward keeping track of expected phage-bacterial interactions as seen during laboratory manipulation of phages. The most basic mathematical descriptor of phages is their titer, that is, their concentration within stocks, experimental vessels, or other environments. Various phenomena can serve to modify phage titers, and indeed phage titers can vary as a function of how they are measured. An important aspect of how changes in titers can occur results from phage interactions with bacteria. These changes tend to vary in degree as a function of bacterial densities within environments, and particularly densities of those bacteria that are susceptible to or at least adsorbable by a given phage type. Using simple mathematical models one can describe phage-bacterial interactions that give rise particularly to phage adsorption events. With elaboration one can consider changes in both phage and bacterial densities as a function of both time and these interactions. In addition, phages along with their impact on bacteria can be considered as spatially constrained processes. In this chapter we consider the simpler of these concepts, providing in particular detailed verbal explanations toward facile mathematical insight. The primary goal is to stimulate a more informed use and manipulation of phages and phage populations within the laboratory as well as toward more effective phage application outside of the laboratory, such as during phage therapy. More generally, numerous issues and approaches to the quantification of phages are considered along with the quantification of individual, ecological, and applied properties of phages.

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Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 49 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
Unknown 49 100%

Demographic breakdown

Readers by professional status Count As %
Student > Ph. D. Student 11 22%
Researcher 8 16%
Student > Master 6 12%
Student > Bachelor 5 10%
Lecturer 2 4%
Other 3 6%
Unknown 14 29%
Readers by discipline Count As %
Immunology and Microbiology 8 16%
Medicine and Dentistry 5 10%
Biochemistry, Genetics and Molecular Biology 5 10%
Agricultural and Biological Sciences 4 8%
Engineering 2 4%
Other 6 12%
Unknown 19 39%
Attention Score in Context

Attention Score in Context

This research output has an Altmetric Attention Score of 2. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 26 June 2018.
All research outputs
#14,084,634
of 23,007,887 outputs
Outputs from Methods in molecular biology
#3,963
of 13,157 outputs
Outputs of similar age
#232,620
of 442,278 outputs
Outputs of similar age from Methods in molecular biology
#395
of 1,498 outputs
Altmetric has tracked 23,007,887 research outputs across all sources so far. This one is in the 37th percentile – i.e., 37% of other outputs scored the same or lower than it.
So far Altmetric has tracked 13,157 research outputs from this source. They receive a mean Attention Score of 3.4. This one has gotten more attention than average, scoring higher than 68% of its peers.
Older research outputs will score higher simply because they've had more time to accumulate mentions. To account for age we can compare this Altmetric Attention Score to the 442,278 tracked outputs that were published within six weeks on either side of this one in any source. This one is in the 46th percentile – i.e., 46% of its contemporaries scored the same or lower than it.
We're also able to compare this research output to 1,498 others from the same source and published within six weeks on either side of this one. This one has gotten more attention than average, scoring higher than 71% of its contemporaries.