Title |
Simultaneous analysis of large-scale RNAi screens for pathogen entry
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Published in |
BMC Genomics, December 2014
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DOI | 10.1186/1471-2164-15-1162 |
Pubmed ID | |
Authors |
Pauli Rämö, Anna Drewek, Cécile Arrieumerlou, Niko Beerenwinkel, Houchaima Ben-Tekaya, Bettina Cardel, Alain Casanova, Raquel Conde-Alvarez, Pascale Cossart, Gábor Csúcs, Simone Eicher, Mario Emmenlauer, Urs Greber, Wolf-Dietrich Hardt, Ari Helenius, Christoph Kasper, Andreas Kaufmann, Saskia Kreibich, Andreas Kühbacher, Peter Kunszt, Shyan Huey Low, Jason Mercer, Daria Mudrak, Simone Muntwiler, Lucas Pelkmans, Javier Pizarro-Cerdá, Michael Podvinec, Eva Pujadas, Bernd Rinn, Vincent Rouilly, Fabian Schmich, Juliane Siebourg-Polster, Berend Snijder, Michael Stebler, Gabriel Studer, Ewa Szczurek, Matthias Truttmann, Christian von Mering, Andreas Vonderheit, Artur Yakimovich, Peter Bühlmann, Christoph Dehio |
Abstract |
Large-scale RNAi screening has become an important technology for identifying genes involved in biological processes of interest. However, the quality of large-scale RNAi screening is often deteriorated by off-targets effects. In order to find statistically significant effector genes for pathogen entry, we systematically analyzed entry pathways in human host cells for eight pathogens using image-based kinome-wide siRNA screens with siRNAs from three vendors. We propose a Parallel Mixed Model (PMM) approach that simultaneously analyzes several non-identical screens performed with the same RNAi libraries. |
X Demographics
Geographical breakdown
Country | Count | As % |
---|---|---|
France | 1 | 33% |
Ireland | 1 | 33% |
Unknown | 1 | 33% |
Demographic breakdown
Type | Count | As % |
---|---|---|
Scientists | 2 | 67% |
Practitioners (doctors, other healthcare professionals) | 1 | 33% |
Mendeley readers
Geographical breakdown
Country | Count | As % |
---|---|---|
Unknown | 36 | 100% |
Demographic breakdown
Readers by professional status | Count | As % |
---|---|---|
Student > Ph. D. Student | 11 | 31% |
Researcher | 8 | 22% |
Student > Master | 5 | 14% |
Professor | 3 | 8% |
Professor > Associate Professor | 3 | 8% |
Other | 1 | 3% |
Unknown | 5 | 14% |
Readers by discipline | Count | As % |
---|---|---|
Biochemistry, Genetics and Molecular Biology | 9 | 25% |
Agricultural and Biological Sciences | 7 | 19% |
Computer Science | 3 | 8% |
Immunology and Microbiology | 3 | 8% |
Mathematics | 2 | 6% |
Other | 5 | 14% |
Unknown | 7 | 19% |