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Next Generation Sequencing

Overview of attention for book
Cover of 'Next Generation Sequencing'

Table of Contents

  1. Altmetric Badge
    Book Overview
  2. Altmetric Badge
    Chapter 1 An Integrated Polysome Profiling and Ribosome Profiling Method to Investigate In Vivo Translatome
  3. Altmetric Badge
    Chapter 2 Measuring Nascent Transcripts by Nascent-seq
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    Chapter 3 Genome-Wide Copy Number Alteration Detection in Preimplantation Genetic Diagnosis
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    Chapter 4 Multiplexed Targeted Sequencing for Oxford Nanopore MinION: A Detailed Library Preparation Procedure
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    Chapter 5 Hi-Plex for Simple, Accurate, and Cost-Effective Amplicon-based Targeted DNA Sequencing
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    Chapter 6 ClickSeq: Replacing Fragmentation and Enzymatic Ligation with Click-Chemistry to Prevent Sequence Chimeras
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    Chapter 7 Genome-Wide Analysis of DNA Methylation in Single Cells Using a Post-bisulfite Adapter Tagging Approach
  9. Altmetric Badge
    Chapter 8 Sequencing of Genomes from Environmental Single Cells
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    Chapter 9 SNP Discovery from Single and Multiplex Genome Assemblies of Non-model Organisms
  11. Altmetric Badge
    Chapter 10 CleanTag Adapters Improve Small RNA Next-Generation Sequencing Library Preparation by Reducing Adapter Dimers
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    Chapter 11 Sampling, Extraction, and High-Throughput Sequencing Methods for Environmental Microbial and Viral Communities
  13. Altmetric Badge
    Chapter 12 A Bloody Primer: Analysis of RNA-Seq from Tissue Admixtures
  14. Altmetric Badge
    Chapter 13 Next-Generation Sequencing of Genome-Wide CRISPR Screens
  15. Altmetric Badge
    Chapter 14 Gene Profiling and T Cell Receptor Sequencing from Antigen-Specific CD4 T Cells
  16. Altmetric Badge
    Chapter 15 Investigate Global Chromosomal Interaction by Hi-C in Human Naive CD4 T Cells
  17. Altmetric Badge
    Chapter 16 Primer Extension, Capture, and On-Bead cDNA Ligation: An Efficient RNAseq Library Prep Method for Determining Reverse Transcription Termination Sites
Attention for Chapter 8: Sequencing of Genomes from Environmental Single Cells
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About this Attention Score

  • In the top 25% of all research outputs scored by Altmetric
  • High Attention Score compared to outputs of the same age (84th percentile)
  • High Attention Score compared to outputs of the same age and source (97th percentile)

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Chapter title
Sequencing of Genomes from Environmental Single Cells
Chapter number 8
Book title
Next Generation Sequencing
Published in
Methods in molecular biology, January 2018
DOI 10.1007/978-1-4939-7514-3_8
Pubmed ID
Book ISBNs
978-1-4939-7512-9, 978-1-4939-7514-3
Authors

Robert M. Bowers, Janey Lee, Tanja Woyke, Bowers, Robert M., Lee, Janey, Woyke, Tanja

Abstract

Sequencing of single bacterial and archaeal cells is an important methodology that provides access to the genetic makeup of uncultivated microorganisms. We here describe the high-throughput fluorescence-activated cell sorting-based isolation of single cells from the environment, their lysis and strand displacement-mediated whole genome amplification. We further outline 16S rRNA gene sequence-based screening of single-cell amplification products, their preparation for Illumina sequencing libraries, and finally propose computational methods for read and contig level quality control of the resulting sequence data.

X Demographics

X Demographics

The data shown below were collected from the profiles of 5 X users who shared this research output. Click here to find out more about how the information was compiled.
Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 22 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
Unknown 22 100%

Demographic breakdown

Readers by professional status Count As %
Researcher 5 23%
Student > Master 4 18%
Professor 2 9%
Student > Ph. D. Student 2 9%
Lecturer 1 5%
Other 3 14%
Unknown 5 23%
Readers by discipline Count As %
Biochemistry, Genetics and Molecular Biology 8 36%
Agricultural and Biological Sciences 6 27%
Environmental Science 1 5%
Neuroscience 1 5%
Unknown 6 27%
Attention Score in Context

Attention Score in Context

This research output has an Altmetric Attention Score of 11. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 31 July 2018.
All research outputs
#3,236,088
of 24,885,505 outputs
Outputs from Methods in molecular biology
#643
of 13,981 outputs
Outputs of similar age
#69,757
of 454,089 outputs
Outputs of similar age from Methods in molecular biology
#37
of 1,485 outputs
Altmetric has tracked 24,885,505 research outputs across all sources so far. Compared to these this one has done well and is in the 86th percentile: it's in the top 25% of all research outputs ever tracked by Altmetric.
So far Altmetric has tracked 13,981 research outputs from this source. They receive a mean Attention Score of 3.5. This one has done particularly well, scoring higher than 95% of its peers.
Older research outputs will score higher simply because they've had more time to accumulate mentions. To account for age we can compare this Altmetric Attention Score to the 454,089 tracked outputs that were published within six weeks on either side of this one in any source. This one has done well, scoring higher than 84% of its contemporaries.
We're also able to compare this research output to 1,485 others from the same source and published within six weeks on either side of this one. This one has done particularly well, scoring higher than 97% of its contemporaries.