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mRNA Decay

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Cover of 'mRNA Decay'

Table of Contents

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    Book Overview
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    Chapter 1 5′-Bromouridine IP Chase (BRIC)-Seq to Determine RNA Half-Lives
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    Chapter 2 Determining mRNA Decay Rates Using RNA Approach to Equilibrium Sequencing (RATE-Seq)
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    Chapter 3 Metabolic Labeling of Newly Synthesized RNA with 4sU to in Parallel Assess RNA Transcription and Decay
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    Chapter 4 Measuring mRNA Decay in Budding Yeast Using Single Molecule FISH
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    Chapter 5 PAR-CLIP for Discovering Target Sites of RNA-Binding Proteins
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    Chapter 6 Characterizing mRNA Sequence Motifs in the 3′-UTR Using GFP Reporter Constructs
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    Chapter 7 iCLIP of the PIWI Protein Aubergine in Drosophila Embryos
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    Chapter 8 Integration of ENCODE RNAseq and eCLIP Data Sets
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    Chapter 9 Identifying miRNA Targets Using AGO-RIPseq
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    Chapter 10 Integrated Analysis of miRNA and mRNA Expression Profiles to Identify miRNA Targets
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    Chapter 11 Identifying RISC Components Using Ago2 Immunoprecipitation and Mass Spectrometry
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    Chapter 12 Using Tet-Off Cells and RNAi Knockdown to Assay mRNA Decay
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    Chapter 13 Identifying Cellular Nonsense-Mediated mRNA Decay (NMD) Targets: Immunoprecipitation of Phosphorylated UPF1 Followed by RNA Sequencing (p-UPF1 RIP−Seq)
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    Chapter 14 Generation of Cell Lines Stably Expressing a Fluorescent Reporter of Nonsense-Mediated mRNA Decay Activity
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    Chapter 15 Reactivation Assay to Identify Direct Targets of the Nonsense-Mediated mRNA Decay Pathway in Drosophila
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    Chapter 16 Studying Nonsense-Mediated mRNA Decay in Mammalian Cells Using a Multicolored Bioluminescence-Based Reporter System
Attention for Chapter 11: Identifying RISC Components Using Ago2 Immunoprecipitation and Mass Spectrometry
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Chapter title
Identifying RISC Components Using Ago2 Immunoprecipitation and Mass Spectrometry
Chapter number 11
Book title
mRNA Decay
Published in
Methods in molecular biology, January 2018
DOI 10.1007/978-1-4939-7540-2_11
Pubmed ID
Book ISBNs
978-1-4939-7539-6, 978-1-4939-7540-2
Authors

Tingfang Yi

Abstract

Complex immunoprecipitation (Co-IP) is a powerful technique for precipitating an intact protein complex out of solution and cell lysates using an antibody that specifically binds to a particular protein in a large complex of proteins. Mass spectrometry (MS) is used to identify, sequence, and quantify proteins. RNA-induced silencing complexes (RISCs), Ago2 centered protein assemblies, are essential for miRNA mediated RNA decay and gene expression regulation; however, the complete list of RISCs is unknown. Here we describe methods used to combine IP and MS to identify new components of RISCs.

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Mendeley readers

The data shown below were compiled from readership statistics for 7 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
Unknown 7 100%

Demographic breakdown

Readers by professional status Count As %
Student > Ph. D. Student 3 43%
Professor 1 14%
Lecturer 1 14%
Student > Master 1 14%
Unknown 1 14%
Readers by discipline Count As %
Biochemistry, Genetics and Molecular Biology 3 43%
Agricultural and Biological Sciences 2 29%
Social Sciences 1 14%
Unknown 1 14%