Title |
BACA: bubble chArt to compare annotations
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Published in |
BMC Bioinformatics, February 2015
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DOI | 10.1186/s12859-015-0477-4 |
Pubmed ID | |
Authors |
Vittorio Fortino, Harri Alenius, Dario Greco |
Abstract |
BackgroundDAVID is the most popular tool for interpreting large lists of gene/proteins classically produced in high-throughput experiments. However, the use of DAVID website becomes difficult when analyzing multiple gene lists, for it does not provide an adequate visualization tool to show/compare multiple enrichment results in a concise and informative manner.ResultWe implemented a new R-based graphical tool, BACA (Bubble chArt to Compare Annotations), which uses the DAVID web service for cross-comparing enrichment analysis results derived from multiple large gene lists. BACA is implemented in R and is freely available at the CRAN repository (http://cran.r-project.org/web/packages/BACA/).ConclusionThe package BACA allows R users to combine multiple annotation charts into one output graph by passing DAVID website. |
X Demographics
Geographical breakdown
Country | Count | As % |
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United States | 2 | 40% |
Norway | 1 | 20% |
Unknown | 2 | 40% |
Demographic breakdown
Type | Count | As % |
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Members of the public | 3 | 60% |
Scientists | 2 | 40% |
Mendeley readers
Geographical breakdown
Country | Count | As % |
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Israel | 1 | 2% |
Netherlands | 1 | 2% |
Norway | 1 | 2% |
Unknown | 41 | 93% |
Demographic breakdown
Readers by professional status | Count | As % |
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Researcher | 17 | 39% |
Student > Ph. D. Student | 8 | 18% |
Other | 3 | 7% |
Student > Master | 3 | 7% |
Student > Doctoral Student | 2 | 5% |
Other | 7 | 16% |
Unknown | 4 | 9% |
Readers by discipline | Count | As % |
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Agricultural and Biological Sciences | 16 | 36% |
Biochemistry, Genetics and Molecular Biology | 7 | 16% |
Computer Science | 5 | 11% |
Medicine and Dentistry | 5 | 11% |
Environmental Science | 1 | 2% |
Other | 4 | 9% |
Unknown | 6 | 14% |