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Bacterial Molecular Networks

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Cover of 'Bacterial Molecular Networks'

Table of Contents

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    Book Overview
  2. Altmetric Badge
    Chapter 1 Bacterial molecular networks: bridging the gap between functional genomics and dynamical modelling.
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    Chapter 2 Bacterial Interactomes: From Interactions to Networks
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    Chapter 3 Bacterial Molecular Networks
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    Chapter 4 Prokaryote genome fluidity: toward a system approach of the mobilome.
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    Chapter 5 Reticulate Classification of Mosaic Microbial Genomes Using NeAT Website
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    Chapter 6 From Metabolic Reactions to Networks and Pathways
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    Chapter 7 Predicting Metabolic Pathways by Sub-network Extraction
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    Chapter 8 Directed Module Detection in a Large-Scale Expression Compendium
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    Chapter 9 Using Phylogenetic Profiles to Predict Functional Relationships
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    Chapter 10 Extracting Regulatory Networks of Escherichia coli from RegulonDB
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    Chapter 11 Browsing Metabolic and Regulatory Networks with BioCyc
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    Chapter 12 Algorithms for Systematic Identification of Small Subgraphs
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    Chapter 13 The Degree Distribution of Networks: Statistical Model Selection
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    Chapter 14 MAVisto: A Tool for Biological Network Motif Analysis
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    Chapter 15 Using MCL to Extract Clusters from Networks
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    Chapter 16 Protein Complex Prediction with RNSC
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    Chapter 17 Network Analysis and Protein Function Prediction with the PRODISTIN Web Site
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    Chapter 18 Using the NeAT Toolbox to Compare Networks to Networks, Clusters to Clusters, and Network to Clusters
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    Chapter 19 Analyzing Biological Data Using R: Methods for Graphs and Networks
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    Chapter 20 Detecting Structural Invariants in Biological Reaction Networks
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    Chapter 21 Petri Nets in Snoopy: A Unifying Framework for the Graphical Display, Computational Modelling, and Simulation of Bacterial Regulatory Networks
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    Chapter 22 Genetic Network Analyzer: A Tool for the Qualitative Modeling and Simulation of Bacterial Regulatory Networks
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    Chapter 23 Logical Modelling of Gene Regulatory Networks with GINsim.
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    Chapter 24 Modelling the Evolution of Mutualistic Symbioses
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    Chapter 25 Modelling the Onset of Virulence in Pathogenic Bacteria
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    Chapter 26 Spatial and Stochastic Cellular Modeling with the Smoldyn Simulator
Attention for Chapter 1: Bacterial molecular networks: bridging the gap between functional genomics and dynamical modelling.
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Chapter title
Bacterial molecular networks: bridging the gap between functional genomics and dynamical modelling.
Chapter number 1
Book title
Bacterial Molecular Networks
Published in
Methods in molecular biology, December 2011
DOI 10.1007/978-1-61779-361-5_1
Pubmed ID
Book ISBNs
978-1-61779-360-8, 978-1-61779-361-5
Authors

van Helden J, Toussaint A, Thieffry D, Jacques van Helden, Ariane Toussaint, Denis Thieffry, Helden, Jacques van, Toussaint, Ariane, Thieffry, Denis

Abstract

This introductory review synthesizes the contents of the volume Bacterial Molecular Networks of the series Methods in Molecular Biology. This volume gathers 9 reviews and 16 method chapters describing computational protocols for the analysis of metabolic pathways, protein interaction networks, and regulatory networks. Each protocol is documented by concrete case studies dedicated to model bacteria or interacting populations. Altogether, the chapters provide a representative overview of state-of-the-art methods for data integration and retrieval, network visualization, graph analysis, and dynamical modelling.

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X Demographics

The data shown below were collected from the profile of 1 X user who shared this research output. Click here to find out more about how the information was compiled.
Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 24 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
United States 1 4%
Greece 1 4%
France 1 4%
Brazil 1 4%
Unknown 20 83%

Demographic breakdown

Readers by professional status Count As %
Student > Master 7 29%
Student > Ph. D. Student 6 25%
Researcher 6 25%
Professor 4 17%
Unknown 1 4%
Readers by discipline Count As %
Agricultural and Biological Sciences 12 50%
Biochemistry, Genetics and Molecular Biology 3 13%
Veterinary Science and Veterinary Medicine 2 8%
Computer Science 2 8%
Psychology 1 4%
Other 2 8%
Unknown 2 8%
Attention Score in Context

Attention Score in Context

This research output has an Altmetric Attention Score of 1. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 30 March 2012.
All research outputs
#18,305,470
of 22,663,969 outputs
Outputs from Methods in molecular biology
#7,813
of 13,024 outputs
Outputs of similar age
#195,773
of 240,852 outputs
Outputs of similar age from Methods in molecular biology
#314
of 463 outputs
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