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Bacterial Molecular Networks

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Cover of 'Bacterial Molecular Networks'

Table of Contents

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    Book Overview
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    Chapter 1 Bacterial molecular networks: bridging the gap between functional genomics and dynamical modelling.
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    Chapter 2 Bacterial Interactomes: From Interactions to Networks
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    Chapter 3 Bacterial Molecular Networks
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    Chapter 4 Prokaryote genome fluidity: toward a system approach of the mobilome.
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    Chapter 5 Reticulate Classification of Mosaic Microbial Genomes Using NeAT Website
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    Chapter 6 From Metabolic Reactions to Networks and Pathways
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    Chapter 7 Predicting Metabolic Pathways by Sub-network Extraction
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    Chapter 8 Directed Module Detection in a Large-Scale Expression Compendium
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    Chapter 9 Using Phylogenetic Profiles to Predict Functional Relationships
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    Chapter 10 Extracting Regulatory Networks of Escherichia coli from RegulonDB
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    Chapter 11 Browsing Metabolic and Regulatory Networks with BioCyc
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    Chapter 12 Algorithms for Systematic Identification of Small Subgraphs
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    Chapter 13 The Degree Distribution of Networks: Statistical Model Selection
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    Chapter 14 MAVisto: A Tool for Biological Network Motif Analysis
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    Chapter 15 Using MCL to Extract Clusters from Networks
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    Chapter 16 Protein Complex Prediction with RNSC
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    Chapter 17 Network Analysis and Protein Function Prediction with the PRODISTIN Web Site
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    Chapter 18 Using the NeAT Toolbox to Compare Networks to Networks, Clusters to Clusters, and Network to Clusters
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    Chapter 19 Analyzing Biological Data Using R: Methods for Graphs and Networks
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    Chapter 20 Detecting Structural Invariants in Biological Reaction Networks
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    Chapter 21 Petri Nets in Snoopy: A Unifying Framework for the Graphical Display, Computational Modelling, and Simulation of Bacterial Regulatory Networks
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    Chapter 22 Genetic Network Analyzer: A Tool for the Qualitative Modeling and Simulation of Bacterial Regulatory Networks
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    Chapter 23 Logical Modelling of Gene Regulatory Networks with GINsim.
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    Chapter 24 Modelling the Evolution of Mutualistic Symbioses
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    Chapter 25 Modelling the Onset of Virulence in Pathogenic Bacteria
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    Chapter 26 Spatial and Stochastic Cellular Modeling with the Smoldyn Simulator
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