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Advances in Computational Biology

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Cover of 'Advances in Computational Biology'

Table of Contents

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    Book Overview
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    Chapter 1 Predictive Modeling of Signaling Transduction Mediated by Tyrosine-Kinase Receptors
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    Chapter 2 Bioinformatic Analysis of Two Proteins with Suspected Linkage to Pulmonary Atresia with Intact Ventricular Septum
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    Chapter 3 Construction and Comparison of Gene Co-expression Networks Based on Immunity Microarray Data from Arabidopsis , Rice, Soybean, Tomato and Cassava
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    Chapter 4 in silico Binding Free Energy Characterization of Cowpea Chlorotic Mottle Virus Coat Protein Homodimer Variants
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    Chapter 5 Analysis of Binding Residues between PDGF-BB and Epidermal Growth Factor Receptor: A Computational Docking Study
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    Chapter 6 Software as a Service for Supporting Biodiversity Conservation Decision Making
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    Chapter 7 Structural and Functional Prediction of the Hypothetical Protein Pa2481 in Pseudomonas Aeruginosa Pao1
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    Chapter 8 Exploration of the Effect of Input Data on the Modeling of Cellular Objective in Flux Balance Analysis (FBA)
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    Chapter 9 Prediction of Potential Kinase Inhibitors in Leishmania spp. through a Machine Learning and Molecular Docking Approach
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    Chapter 10 Functional Protein Prediction Using HMM Based Feature Representation and Relevance Analysis
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    Chapter 11 High Throughput Location Proteomics in Confocal Images from the Human Protein Atlas Using a Bag-of-Features Representation
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    Chapter 12 Measuring Complexity in an Aquatic Ecosystem
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    Chapter 13 Possible Antibiofilm Effect of Peptides Derived from IcaR Repressor of Staphylococcus epidermidis Responsible for Hospital-Acquired Sepsis
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    Chapter 14 “Head to Tail” Tool Analysis through ClustalW Alignment Algorithms and Construction of Distance Method Neighbor-Joining Trees Based on Genus Fusarium Genomic Distances
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    Chapter 15 False Positive Reduction in Automatic Segmentation System
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    Chapter 16 Photosynthesis Thermodynamic Efficiency Facing Climate Change
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    Chapter 17 Thermogenesis Driven by ATP Hydrolysis in a Model with Cubic Autocatalysis
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    Chapter 18 Towards a Linked Open Data Model for Coffee Functional Relationships
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    Chapter 19 Stability Analysis of Antimicrobial Peptides in Solvation Conditions by Molecular Dynamics
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    Chapter 20 Application of Genome Studies of Coffee Rust
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    Chapter 21 In-silico Analysis of the Active Cavity of N-Acetylgalactosamine-6-Sulfate Sulfatase in Eight Species
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    Chapter 22 Gene Predictors Ensemble for Complex Metagenomes
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    Chapter 23 Classification of Antimicrobial Peptides by Using the p -spectrum Kernel and Support Vector Machines
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    Chapter 24 Genomic Relationships among Different Timor Hybrid ( Coffea L.) Accessions as Revealed by SNP Identification and RNA-Seq Analysis
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    Chapter 25 A Combined Sensitivity and Metabolic Flux Analysis Unravel the Importance of Amino Acid Feeding Strategies in Clavulanic Acid Biosynthesis
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    Chapter 26 Flux Balance Analysis and Strain Optimization for Ethanol Production in Saccharomyces cerevisiae
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    Chapter 27 Domain Ontology-Based Query Expansion: Relationships Types-Centered Analysis Using Gene Ontology
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    Chapter 28 FS-Tree: Sequential Association Rules and First Applications to Protein Secondary Structure Analysis
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    Chapter 29 Presentation and Evaluation of ABMS (Automatic Blast for Massive Sequencing)
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    Chapter 30 In silico Analysis of Iduronate 2 Sulfatase Mutations in Colombian Patients with Hunter Syndrome (MPSII)
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    Chapter 31 Phylogenetic Analysis of Four Dung Beetle Species of Neotropical Genus Oxyternon (Coleoptera: Scarabaeidae: Scarabaeinae) Based on 28S and COI Partial Regions
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    Chapter 32 Limits to Sequencing and de novo Assembly: Classic Benchmark Sequences for Optimizing Fungal NGS Designs
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    Chapter 33 Optimal Control for a Discrete Time Influenza Model
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    Chapter 34 Transcriptomics of the Immune System of Hydrozoan Hydractinia symbiolongicarpus Using High Throughput Sequencing Methods
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    Chapter 35 Fuzzy Model Proposal for the Coffee Berry Borer Expansion at Colombian Coffee Fields
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    Chapter 36 Analysis of Structure and Hemolytic Activity Relationships of Antimicrobial Peptides (AMPs)
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    Chapter 37 Candidates for New Molecules Controlling Allorecognition in Hydractinia symbiolongicarpus
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    Chapter 38 Escherichia coli’s OmpA as Biosurfactant for Cosmetic Industry: Stability Analysis and Experimental Validation Based on Molecular Simulations
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    Chapter 39 Molecular Cloning, Modelling and Docking with Curcumin of the Dengue Virus 2 NS5 Polymerase Domain
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    Chapter 40 In Silico Analysis for Biomass Synthesis under Different CO 2 Levels for Chlamydomonas reinhardtii Utilizing a Flux Balance Analysis Approach
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    Chapter 41 Analysis of Metabolic Functionality and Thermodynamic Feasibility of a Metagenomic Sample from “El Coquito” Hot Spring
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    Chapter 42 Identification of Small Non-coding RNAs in Bacterial Genome Annotation Using Databases and Computational Approaches
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    Chapter 43 Structural Modeling of Toxoplasma gondii TGME49_289620 Proteinase
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    Chapter 44 Diversification of the Major Histocompatibility Complex (MHC) -G and -B Loci in New World Primates
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    Chapter 45 A Methodology for Optimizing the E-value Threshold in Alignment-Based Gene Ontology Prediction Using the ROC Curve
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    Chapter 46 Hydrolytic Activity of OXA and CTX-M beta-Lactamases against beta-Lactamic Antibiotics
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    Chapter 47 Analysis in Silico of 5’-Terminal Secondary Structures of Hepatitis C Virus Sequences Genotype 1 from Colombia
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    Chapter 48 In Silico Hybridization System for Mapping Functional Genes of Soil Microorganism Using Next Generation Sequencing
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    Chapter 49 Identification of Differently Expresed Proteins Related to Drillings Fluids Exposure in Hydractinia Symbiolongicarpus by Mass Spectrometry
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    Chapter 50 In silico Modificiton of Cathelicidins Generates Analogous Peptides with Improved Antimycobacterial Activity
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    Chapter 51 Harmonizing Protection and Publication of Research Findings in Biosciences and Bioinformatics
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    Chapter 52 Mathematical Modeling of Lignocellulolytic Enzyme Production from Three Species of White Rot Fungi by Solid-State Fermentation
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    Chapter 53 Bioinformatics Tools and Data Mining for Therapeutic Drug Analysis
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    Chapter 54 iTRAQ, The High Throughput Data Analysis of Proteins to Understand Immunologic Expression in Insect
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