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Gene Regulatory Networks

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Cover of 'Gene Regulatory Networks'

Table of Contents

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    Book Overview
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    Chapter 1 How do you find transcription factors? Computational approaches to compile and annotate repertoires of regulators for any genome.
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    Chapter 2 Expression Pattern Analysis of Regulatory Transcription Factors in Caenorhabditis elegans
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    Chapter 3 High-Throughput SELEX Determination of DNA Sequences Bound by Transcription Factors In Vitro
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    Chapter 4 Convenient Determination of Protein-Binding DNA Sequences Using Quadruple 9-Mer-Based Microarray and DsRed-Monomer Fusion Protein
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    Chapter 5 Analysis of Specific Protein–DNA Interactions by Bacterial One-Hybrid Assay
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    Chapter 6 Gene Regulatory Networks
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    Chapter 7 Detecting protein-protein interactions with the Split-Ubiquitin sensor.
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    Chapter 8 Genome-Wide Dissection of Posttranscriptional and Posttranslational Interactions
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    Chapter 9 Linking Cellular Signalling to Gene Expression Using EXT-Encoded Reporter Libraries
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    Chapter 10 Sample Preparation for Small RNA Massive Parallel Sequencing
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    Chapter 11 CAGE (Cap Analysis of Gene Expression): A Protocol for the Detection of Promoter and Transcriptional Networks
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    Chapter 12 Gene Regulatory Networks
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    Chapter 13 Detecting long-range chromatin interactions using the chromosome conformation capture sequencing (4C-seq) method.
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    Chapter 14 Analyzing Transcription Factor Occupancy During Embryo Development Using ChIP-seq
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    Chapter 15 Genome-Wide Profiling of DNA-Binding Proteins Using Barcode-Based Multiplex Solexa Sequencing
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    Chapter 16 Computational Analysis of Protein–DNA Interactions from ChIP-seq Data
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    Chapter 17 Using a Yeast Inverse One-Hybrid System to Identify Functional Binding Sites of Transcription Factors
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    Chapter 18 Using cisTargetX to Predict Transcriptional Targets and Networks in Drosophila
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    Chapter 19 Proteomic Methodologies to Study Transcription Factor Function
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    Chapter 20 A High-throughput Gateway-Compatible Yeast One-Hybrid Screen to Detect Protein–DNA Interactions
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    Chapter 21 BioTapestry: A Tool to Visualize the Dynamic Properties of Gene Regulatory Networks
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    Chapter 22 Implicit Methods for Qualitative Modeling of Gene Regulatory Networks
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