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Transcription Factor Regulatory Networks

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Cover of 'Transcription Factor Regulatory Networks'

Table of Contents

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    Book Overview
  2. Altmetric Badge
    Chapter 1 Detecting protein-protein interactions/complex components using mass spectrometry coupled techniques.
  3. Altmetric Badge
    Chapter 2 Analysis of Transcription Factor Networks Using IVV Method
  4. Altmetric Badge
    Chapter 3 Next-generation sequencing coupled with a cell-free display technology for reliable interactome of translational factors.
  5. Altmetric Badge
    Chapter 4 Chromatin immunoprecipitation protocol for Mammalian cells.
  6. Altmetric Badge
    Chapter 5 Detecting Protein-DNA Interactions Using a Modified Yeast One-Hybrid System.
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    Chapter 6 RNA Sequencing: From Sample Preparation to Analysis
  8. Altmetric Badge
    Chapter 7 Detecting Expressed Genes Using CAGE.
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    Chapter 8 A tutorial to identify nonlinear associations in gene expression time series data.
  10. Altmetric Badge
    Chapter 9 Inference of TFRNs (2)
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    Chapter 10 Identification of the minimal connected network of transcription factors by transcriptomic and genomic data integration.
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    Chapter 11 Modeling and Simulation Using CellDesigner
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    Chapter 12 Human Genome Network Platform: A Resource for TFRN Analysis.
  14. Altmetric Badge
    Chapter 13 Identification of Transcription Factors Activated in Thymic Epithelial Cells During Embryonic Thymus Development
  15. Altmetric Badge
    Chapter 14 Analysis of NFATc1-Centered Transcription Factor Regulatory Networks in Osteoclast Formation
  16. Altmetric Badge
    Chapter 15 Transcriptional Regulation in Adipogenesis Through PPARγ-Dependent and -Independent Mechanisms by Prostaglandins.
  17. Altmetric Badge
    Chapter 16 Analysis of TFRNs Associated with Steroid Hormone-Related Cancers.
  18. Altmetric Badge
    Chapter 17 Repositioning Monocyte TFRN into Fibroblasts
Attention for Chapter 3: Next-generation sequencing coupled with a cell-free display technology for reliable interactome of translational factors.
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Chapter title
Next-generation sequencing coupled with a cell-free display technology for reliable interactome of translational factors.
Chapter number 3
Book title
Transcription Factor Regulatory Networks
Published in
Methods in molecular biology, January 2014
DOI 10.1007/978-1-4939-0805-9_3
Pubmed ID
Book ISBNs
978-1-4939-0804-2, 978-1-4939-0805-9
Authors

Etsuko Miyamoto-Sato, Miyamoto-Sato, Etsuko

Abstract

Next-generation sequencing (NGS) has been applied to various kinds of omics studies, resulting in many biological and medical discoveries. However, high-throughput protein-protein interactome datasets derived from detection by sequencing are scarce, because protein-protein interaction analysis requires many cell manipulations to examine the interactions. The low reliability of the high-throughput data is also a problem. Here, we describe a cell-free display technology combined with NGS that can improve both the coverage and reliability of interactome datasets. This in vitro method is suitable for exploring the interactome networks of transcription factors.

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Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 5 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
Unknown 5 100%

Demographic breakdown

Readers by professional status Count As %
Researcher 2 40%
Student > Ph. D. Student 1 20%
Other 1 20%
Unknown 1 20%
Readers by discipline Count As %
Biochemistry, Genetics and Molecular Biology 2 40%
Agricultural and Biological Sciences 1 20%
Unknown 2 40%
Attention Score in Context

Attention Score in Context

This research output has an Altmetric Attention Score of 1. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 15 June 2014.
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#20,231,392
of 22,757,090 outputs
Outputs from Methods in molecular biology
#9,863
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#264,796
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Outputs of similar age from Methods in molecular biology
#405
of 597 outputs
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