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Transcription Factor Regulatory Networks

Overview of attention for book
Cover of 'Transcription Factor Regulatory Networks'

Table of Contents

  1. Altmetric Badge
    Book Overview
  2. Altmetric Badge
    Chapter 1 Detecting protein-protein interactions/complex components using mass spectrometry coupled techniques.
  3. Altmetric Badge
    Chapter 2 Analysis of Transcription Factor Networks Using IVV Method
  4. Altmetric Badge
    Chapter 3 Next-generation sequencing coupled with a cell-free display technology for reliable interactome of translational factors.
  5. Altmetric Badge
    Chapter 4 Chromatin immunoprecipitation protocol for Mammalian cells.
  6. Altmetric Badge
    Chapter 5 Detecting Protein-DNA Interactions Using a Modified Yeast One-Hybrid System.
  7. Altmetric Badge
    Chapter 6 RNA Sequencing: From Sample Preparation to Analysis
  8. Altmetric Badge
    Chapter 7 Detecting Expressed Genes Using CAGE.
  9. Altmetric Badge
    Chapter 8 A tutorial to identify nonlinear associations in gene expression time series data.
  10. Altmetric Badge
    Chapter 9 Inference of TFRNs (2)
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    Chapter 10 Identification of the minimal connected network of transcription factors by transcriptomic and genomic data integration.
  12. Altmetric Badge
    Chapter 11 Modeling and Simulation Using CellDesigner
  13. Altmetric Badge
    Chapter 12 Human Genome Network Platform: A Resource for TFRN Analysis.
  14. Altmetric Badge
    Chapter 13 Identification of Transcription Factors Activated in Thymic Epithelial Cells During Embryonic Thymus Development
  15. Altmetric Badge
    Chapter 14 Analysis of NFATc1-Centered Transcription Factor Regulatory Networks in Osteoclast Formation
  16. Altmetric Badge
    Chapter 15 Transcriptional Regulation in Adipogenesis Through PPARγ-Dependent and -Independent Mechanisms by Prostaglandins.
  17. Altmetric Badge
    Chapter 16 Analysis of TFRNs Associated with Steroid Hormone-Related Cancers.
  18. Altmetric Badge
    Chapter 17 Repositioning Monocyte TFRN into Fibroblasts
Attention for Chapter 6: RNA Sequencing: From Sample Preparation to Analysis
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About this Attention Score

  • In the top 25% of all research outputs scored by Altmetric
  • High Attention Score compared to outputs of the same age (86th percentile)
  • High Attention Score compared to outputs of the same age and source (94th percentile)

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1 Google+ user

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51 Mendeley
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Chapter title
RNA Sequencing: From Sample Preparation to Analysis
Chapter number 6
Book title
Transcription Factor Regulatory Networks
Published in
Methods in molecular biology, January 2014
DOI 10.1007/978-1-4939-0805-9_6
Pubmed ID
Book ISBNs
978-1-4939-0804-2, 978-1-4939-0805-9
Authors

Sho Maekawa, Ayako Suzuki, Sumio Sugano, Yutaka Suzuki, Maekawa, Sho, Suzuki, Ayako, Sugano, Sumio, Suzuki, Yutaka

Abstract

The introduction of RNA sequencing (RNA-seq), as a direct result of rapid progression of next-generation sequencing technologies, has revolutionized the world of transcriptomics. It enables quantification of the complete set of RNA with all its isoforms in a given cell, in far greater accuracy than before. Here, we provide a step-by-step guide to the sample preparation in RNA-seq and an overview of the bioinformatic analysis that is required following the cDNA sequencing.

X Demographics

X Demographics

The data shown below were collected from the profiles of 2 X users who shared this research output. Click here to find out more about how the information was compiled.
Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 51 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
United Kingdom 1 2%
United States 1 2%
Unknown 49 96%

Demographic breakdown

Readers by professional status Count As %
Student > Ph. D. Student 8 16%
Student > Master 8 16%
Researcher 7 14%
Student > Bachelor 5 10%
Other 5 10%
Other 8 16%
Unknown 10 20%
Readers by discipline Count As %
Biochemistry, Genetics and Molecular Biology 14 27%
Agricultural and Biological Sciences 11 22%
Medicine and Dentistry 2 4%
Social Sciences 2 4%
Immunology and Microbiology 2 4%
Other 7 14%
Unknown 13 25%
Attention Score in Context

Attention Score in Context

This research output has an Altmetric Attention Score of 9. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 09 January 2015.
All research outputs
#3,546,029
of 22,757,090 outputs
Outputs from Methods in molecular biology
#848
of 13,089 outputs
Outputs of similar age
#42,541
of 305,260 outputs
Outputs of similar age from Methods in molecular biology
#33
of 597 outputs
Altmetric has tracked 22,757,090 research outputs across all sources so far. Compared to these this one has done well and is in the 84th percentile: it's in the top 25% of all research outputs ever tracked by Altmetric.
So far Altmetric has tracked 13,089 research outputs from this source. They receive a mean Attention Score of 3.3. This one has done particularly well, scoring higher than 93% of its peers.
Older research outputs will score higher simply because they've had more time to accumulate mentions. To account for age we can compare this Altmetric Attention Score to the 305,260 tracked outputs that were published within six weeks on either side of this one in any source. This one has done well, scoring higher than 86% of its contemporaries.
We're also able to compare this research output to 597 others from the same source and published within six weeks on either side of this one. This one has done particularly well, scoring higher than 94% of its contemporaries.