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Transcription Factor Regulatory Networks

Overview of attention for book
Cover of 'Transcription Factor Regulatory Networks'

Table of Contents

  1. Altmetric Badge
    Book Overview
  2. Altmetric Badge
    Chapter 1 Detecting protein-protein interactions/complex components using mass spectrometry coupled techniques.
  3. Altmetric Badge
    Chapter 2 Analysis of Transcription Factor Networks Using IVV Method
  4. Altmetric Badge
    Chapter 3 Next-generation sequencing coupled with a cell-free display technology for reliable interactome of translational factors.
  5. Altmetric Badge
    Chapter 4 Chromatin immunoprecipitation protocol for Mammalian cells.
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    Chapter 5 Detecting Protein-DNA Interactions Using a Modified Yeast One-Hybrid System.
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    Chapter 6 RNA Sequencing: From Sample Preparation to Analysis
  8. Altmetric Badge
    Chapter 7 Detecting Expressed Genes Using CAGE.
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    Chapter 8 A tutorial to identify nonlinear associations in gene expression time series data.
  10. Altmetric Badge
    Chapter 9 Inference of TFRNs (2)
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    Chapter 10 Identification of the minimal connected network of transcription factors by transcriptomic and genomic data integration.
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    Chapter 11 Modeling and Simulation Using CellDesigner
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    Chapter 12 Human Genome Network Platform: A Resource for TFRN Analysis.
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    Chapter 13 Identification of Transcription Factors Activated in Thymic Epithelial Cells During Embryonic Thymus Development
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    Chapter 14 Analysis of NFATc1-Centered Transcription Factor Regulatory Networks in Osteoclast Formation
  16. Altmetric Badge
    Chapter 15 Transcriptional Regulation in Adipogenesis Through PPARγ-Dependent and -Independent Mechanisms by Prostaglandins.
  17. Altmetric Badge
    Chapter 16 Analysis of TFRNs Associated with Steroid Hormone-Related Cancers.
  18. Altmetric Badge
    Chapter 17 Repositioning Monocyte TFRN into Fibroblasts
Attention for Chapter 5: Detecting Protein-DNA Interactions Using a Modified Yeast One-Hybrid System.
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Chapter title
Detecting Protein-DNA Interactions Using a Modified Yeast One-Hybrid System.
Chapter number 5
Book title
Transcription Factor Regulatory Networks
Published in
Methods in molecular biology, January 2014
DOI 10.1007/978-1-4939-0805-9_5
Pubmed ID
Book ISBNs
978-1-4939-0804-2, 978-1-4939-0805-9
Authors

Kazuhisa Ota, Shu-Ying Feng, Takashi Ito, Ota, Kazuhisa, Feng, Shu-Ying, Ito, Takashi

Abstract

The yeast one-hybrid (Y1H) system has been among the methods of choice to detect protein-DNA interactions. However, conventional Y1H systems with a single auxotrophic reporter gene often suffer from high incidence of false positives to demonstrate a limited power in large-scale screenings. Here we describe a refined Y1H system that uses two independent bait sequences, each controlling a distinct reporter gene integrated in the host genome. With these modifications and a method of targeted DNA methylation, we succeeded in efficient isolation of clones for methylated DNA-binding proteins from mammalian cDNA libraries.

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X Demographics

The data shown below were collected from the profiles of 2 X users who shared this research output. Click here to find out more about how the information was compiled.
Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 9 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
Unknown 9 100%

Demographic breakdown

Readers by professional status Count As %
Researcher 5 56%
Student > Bachelor 2 22%
Student > Master 1 11%
Unknown 1 11%
Readers by discipline Count As %
Biochemistry, Genetics and Molecular Biology 5 56%
Agricultural and Biological Sciences 2 22%
Nursing and Health Professions 1 11%
Unknown 1 11%
Attention Score in Context

Attention Score in Context

This research output has an Altmetric Attention Score of 1. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 10 August 2015.
All research outputs
#17,722,094
of 22,757,090 outputs
Outputs from Methods in molecular biology
#7,186
of 13,089 outputs
Outputs of similar age
#220,816
of 305,260 outputs
Outputs of similar age from Methods in molecular biology
#262
of 597 outputs
Altmetric has tracked 22,757,090 research outputs across all sources so far. This one is in the 19th percentile – i.e., 19% of other outputs scored the same or lower than it.
So far Altmetric has tracked 13,089 research outputs from this source. They receive a mean Attention Score of 3.3. This one is in the 39th percentile – i.e., 39% of its peers scored the same or lower than it.
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We're also able to compare this research output to 597 others from the same source and published within six weeks on either side of this one. This one has gotten more attention than average, scoring higher than 50% of its contemporaries.