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Stem Cell Transcriptional Networks

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Cover of 'Stem Cell Transcriptional Networks'

Table of Contents

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    Book Overview
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    Chapter 1 Efficient library preparation for next-generation sequencing analysis of genome-wide epigenetic and transcriptional landscapes in embryonic stem cells.
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    Chapter 2 Analysis of next-generation sequencing data using galaxy.
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    Chapter 3 edgeR for Differential RNA-seq and ChIP-seq Analysis: An Application to Stem Cell Biology.
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    Chapter 4 Use Model-Based Analysis of ChIP-Seq (MACS) to Analyze Short Reads Generated by Sequencing Protein-DNA Interactions in Embryonic Stem Cells.
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    Chapter 5 Spatial Clustering for Identification of ChIP-Enriched Regions (SICER) to Map Regions of Histone Methylation Patterns in Embryonic Stem Cells
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    Chapter 6 Identifying Stem Cell Gene Expression Patterns and Phenotypic Networks with AutoSOME
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    Chapter 7 Visualization and Clustering of High-Dimensional Transcriptome Data Using GATE
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    Chapter 8 Interpreting and Visualizing ChIP-seq Data with the seqMINER Software.
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    Chapter 9 A Description of the Molecular Signatures Database (MSigDB) Web Site
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    Chapter 10 Use of Genome-Wide RNAi Screens to Identify Regulators of Embryonic Stem Cell Pluripotency and Self-Renewal
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    Chapter 11 Correlating Histone Modification Patterns with Gene Expression Data During Hematopoiesis
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    Chapter 12 In Vitro Maturation and In Vitro Fertilization of Mouse Oocytes and Preimplantation Embryo Culture
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    Chapter 13 Derivation and manipulation of trophoblast stem cells from mouse blastocysts.
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    Chapter 14 Conversion of epiblast stem cells to embryonic stem cells using growth factors and small molecule inhibitors.
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    Chapter 15 Generation of Induced Pluripotent Stem Cells Using Chemical Inhibition and Three Transcription Factors
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    Chapter 16 Transdifferentiation of Mouse Fibroblasts and Hepatocytes to Functional Neurons
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    Chapter 17 Direct Lineage Conversion of Pancreatic Exocrine to Endocrine Beta Cells In Vivo with Defined Factors
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    Chapter 18 Direct Reprogramming of Cardiac Fibroblasts to Cardiomyocytes Using MicroRNAs.
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    Chapter 19 Reprogramming Somatic Cells into Pluripotent Stem Cells Using miRNAs.
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