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Computational Biology of Transcription Factor Binding

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Cover of 'Computational Biology of Transcription Factor Binding'

Table of Contents

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    Book Overview
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    Chapter 1 An Overview of the Computational Analyses and Discovery of Transcription Factor Binding Sites
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    Chapter 2 Components and mechanisms of regulation of gene expression.
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    Chapter 3 Regulatory Regions in DNA: Promoters, Enhancers, Silencers, and Insulators
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    Chapter 4 Three-Dimensional Structures of DNA-Bound Transcriptional Regulators
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    Chapter 5 Computational Biology of Transcription Factor Binding
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    Chapter 6 Motif Discovery Using Expectation Maximization and Gibbs’ Sampling
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    Chapter 7 Probabilistic Approaches to Transcription Factor Binding Site Prediction
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    Chapter 8 The Motif Tool Assessment Platform (MTAP) for Sequence-Based Transcription Factor Binding Site Prediction Tools
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    Chapter 9 Computational analysis of ChIP-seq data.
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    Chapter 10 Probabilistic Peak Calling and Controlling False Discovery Rate Estimations in Transcription Factor Binding Site Mapping from ChIP-seq
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    Chapter 11 Sequence Analysis of Chromatin Immunoprecipitation Data for Transcription Factors
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    Chapter 12 Inferring Protein–DNA Interaction Parameters from SELEX Experiments
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    Chapter 13 Kernel-Based Identification of Regulatory Modules
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    Chapter 14 Identification of Transcription Factor Binding Sites Derived from Transposable Element Sequences Using ChIP-seq
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    Chapter 15 Target Gene Identification via Nuclear Receptor Binding Site Prediction
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    Chapter 16 Computing Chromosome Conformation
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    Chapter 17 Large-Scale Identification and Analysis of C-Proteins
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    Chapter 18 Evolution of cis -Regulatory Sequences in Drosophila
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    Chapter 19 Regulating the Regulators: Modulators of Transcription Factor Activity
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    Chapter 20 Annotating the Regulatory Genome
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    Chapter 21 Computational Identification of Plant Transcription Factors and the Construction of the PlantTFDB Database
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    Chapter 22 Practical Computational Methods for Regulatory Genomics: A cis GRN-Lexicon and cis GRN-Browser for Gene Regulatory Networks
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    Chapter 23 Reconstructing Transcriptional Regulatory Networks Using Three-Way Mutual Information and Bayesian Networks
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    Chapter 24 Computational Biology of Transcription Factor Binding
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Citations

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Title
Computational Biology of Transcription Factor Binding
Published by
Humana Press, September 2010
DOI 10.1007/978-1-60761-854-6
ISBNs
978-1-60761-853-9, 978-1-60761-854-6
Editors

Ladunga, Istvan

Twitter Demographics

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Mendeley readers

The data shown below were compiled from readership statistics for 276 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
United States 5 2%
France 3 1%
Germany 2 <1%
Netherlands 2 <1%
Italy 2 <1%
Russia 2 <1%
Chile 2 <1%
United Kingdom 2 <1%
Australia 1 <1%
Other 6 2%
Unknown 249 90%

Demographic breakdown

Readers by professional status Count As %
Student > Ph. D. Student 83 30%
Researcher 73 26%
Student > Bachelor 22 8%
Student > Master 19 7%
Student > Postgraduate 14 5%
Other 43 16%
Unknown 22 8%
Readers by discipline Count As %
Agricultural and Biological Sciences 151 55%
Biochemistry, Genetics and Molecular Biology 51 18%
Computer Science 13 5%
Engineering 5 2%
Medicine and Dentistry 5 2%
Other 25 9%
Unknown 26 9%