Protein Networks and Pathway Analysis

Chapter 1 Mining Protein–Protein Interactions from Published Literature Using Linguamatics I2E

Chapter 2 Relative Avidity, Specificity, and Sensitivity of Transcription Factor–DNA Binding in Genome-Scale Experiments

Chapter 3 Curation of Inhibitor-Target Data: Process and Impact on Pathway Analysis

Chapter 4 Profiling Protein Interaction Networks with Functional Protein Microarrays

Chapter 5 Manual Annotation of Protein Interactions

Chapter 7 PANTHER pathway: an ontology-based pathway database coupled with data analysis tools.

Chapter 8 Prioritizing Genes for Pathway Impact Using Network Analysis

Chapter 9 Discovering Biological Networks from Diverse Functional Genomic Data

Chapter 10 Functional Analysis of OMICs Data and Small Molecule Compounds in an Integrated “Knowledge-Based” Platform

Chapter 11 Kinetic Modeling as a Tool to Integrate Multilevel Dynamic Experimental Data

Chapter 12 Cytoscape: A Community-Based Framework for Network Modeling

Chapter 13 Semantic data integration and knowledge management to represent biological network associations.

Chapter 14 Solutions for Complex, Multi Data Type and Multi Tool Analysis: Principles and Applications of Using Workflow and Pipelining Methods

Chapter 15 High-Throughput siRNA Screening as a Method of Perturbation of Biological Systems and Identification of Targeted Pathways Coupled with Compound Screening

Chapter 16 Pathway and Network Analysis with High-Density Allelic Association Data

Chapter 17 miRNAs: From Biogenesis to Networks

Chapter 18 MetaMiner (CF): A Disease-Oriented Bioinformatics Analysis Environment

Chapter 19 Translational Research and Biomedical Informatics

Chapter 20 ArrayTrack: an FDA and public genomic tool.