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Parasite Genomics Protocols

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Cover of 'Parasite Genomics Protocols'

Table of Contents

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    Book Overview
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    Chapter 1 The eukaryotic pathogen databases: a functional genomic resource integrating data from human and veterinary parasites.
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    Chapter 2 From sequence mapping to genome assemblies.
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    Chapter 3 Sequencing and annotation of mitochondrial genomes from individual parasitic helminths.
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    Chapter 4 A Beginners Guide to Estimating the Non-synonymous to Synonymous Rate Ratio of all Protein-Coding Genes in a Genome.
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    Chapter 5 Exploiting Genetic Variation to Discover Genes Involved in Important Disease Phenotypes
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    Chapter 6 Identification and analysis of ingi-related retroposons in the trypanosomatid genomes.
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    Chapter 7 Approaches for Studying mRNA Decay Mediated by SIDER2 Retroposons in Leishmania
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    Chapter 8 Gene Suppression in Schistosomes Using RNAi.
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    Chapter 9 Construction of Trypanosoma brucei Illumina RNA-Seq Libraries Enriched for Transcript Ends.
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    Chapter 10 Techniques to Study Epigenetic Control and the Epigenome in Parasites
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    Chapter 11 The Genome-Wide Identification of Promoter Regions in Toxoplasma gondii.
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    Chapter 12 RNA-Seq Approaches for Determining mRNA Abundance in Leishmania.
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    Chapter 13 Protein microarrays for parasite antigen discovery.
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    Chapter 14 A transposon-based tool for transformation and mutagenesis in trypanosomatid protozoa.
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    Chapter 15 Separation of Basic Proteins from Leishmania Using a Combination of Free Flow Electrophoresis (FFE) and 2D Electrophoresis (2-DE) Under Basic Conditions
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    Chapter 16 Proteomic Analysis of Posttranslational Modifications Using iTRAQ in Leishmania.
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    Chapter 17 Large-Scale Differential Proteome Analysis in Plasmodium falciparum Under Drug Treatment.
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    Chapter 18 Parasite Genomics Protocols
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    Chapter 19 Molecular Genotyping of Trypanosoma cruzi for Lineage Assignment and Population Genetics.
  21. Altmetric Badge
    Chapter 20 Screening Leishmania donovani Complex-Specific Genes Required for Visceral Disease.
  22. Altmetric Badge
    Chapter 21 ERRATUM: From Sequence Mapping to Genome Assemblies
Attention for Chapter 20: Screening Leishmania donovani Complex-Specific Genes Required for Visceral Disease.
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Chapter title
Screening Leishmania donovani Complex-Specific Genes Required for Visceral Disease.
Chapter number 20
Book title
Parasite Genomics Protocols
Published in
Methods in molecular biology, January 2015
DOI 10.1007/978-1-4939-1438-8_20
Pubmed ID
Book ISBNs
978-1-4939-1437-1, 978-1-4939-1438-8
Authors

Wen-Wei Zhang, Greg Matlashewski, Zhang, Wen-Wei, Matlashewski, Greg

Abstract

Leishmania protozoan parasites are the causing agent of leishmaniasis. Depending on the infecting species, Leishmania infection can causes a wide variety of diseases such as self-healing cutaneous lesions by L. major and fatal visceral leishmaniasis by L. donovani and L. infantum. Comparison of the visceral disease causing L. infantum genome with cutaneous disease causing L. major and L. braziliensis genomes has identified 25 L. infantum (L. donovani complex) species-specific genes that are absent or pseudogenes in L. major and L. braziliensis. To investigate whether these L. donovani complex species-specific genes are involved in visceral infection, we cloned these genes from L. donovani and introduced them into L. major and then determined whether the transgenic L. major had an increased ability to survive in liver and spleen of BALB/c mice. Several of these L. donovani complex specific genes were found to significantly increase L. major survival in visceral organs in BALB/c mice including the A2 and Ld2834 genes, while down regulation of these genes in L. donovani by either antisense RNA or gene knockout dramatically reduced L. donovani virulence in BALB/c mice. This demonstrated that L. donovani complex species-specific genes play important roles in visceral infection. In this chapter, we describe procedures to screen L. donovani complex specific genes required for visceral infection by cross species transgenic expression, gene deletion targeting and measuring infection levels in mice.

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Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 21 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
United Kingdom 1 5%
Unknown 20 95%

Demographic breakdown

Readers by professional status Count As %
Student > Ph. D. Student 7 33%
Researcher 4 19%
Student > Bachelor 2 10%
Professor 2 10%
Student > Master 2 10%
Other 2 10%
Unknown 2 10%
Readers by discipline Count As %
Agricultural and Biological Sciences 7 33%
Biochemistry, Genetics and Molecular Biology 3 14%
Medicine and Dentistry 2 10%
Social Sciences 2 10%
Nursing and Health Professions 1 5%
Other 3 14%
Unknown 3 14%
Attention Score in Context

Attention Score in Context

This research output has an Altmetric Attention Score of 1. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 14 November 2014.
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#17,731,702
of 22,770,070 outputs
Outputs from Methods in molecular biology
#7,189
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Outputs of similar age
#241,668
of 352,903 outputs
Outputs of similar age from Methods in molecular biology
#428
of 996 outputs
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So far Altmetric has tracked 13,090 research outputs from this source. They receive a mean Attention Score of 3.3. This one is in the 39th percentile – i.e., 39% of its peers scored the same or lower than it.
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We're also able to compare this research output to 996 others from the same source and published within six weeks on either side of this one. This one has gotten more attention than average, scoring higher than 52% of its contemporaries.