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Bioinformatics for Comparative Proteomics

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Cover of 'Bioinformatics for Comparative Proteomics'

Table of Contents

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    Book Overview
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    Chapter 1 Protein Bioinformatics Databases and Resources
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    Chapter 2 A Guide to UniProt for Protein Scientists
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    Chapter 3 InterPro Protein Classification
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    Chapter 4 Reactome knowledgebase of human biological pathways and processes.
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    Chapter 5 eFIP: A Tool for Mining Functional Impact of Phosphorylation from Literature
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    Chapter 6 A Tutorial on Protein Ontology Resources for Proteomic Studies
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    Chapter 7 Structure-Guided Rule-Based Annotation of Protein Functional Sites in UniProt Knowledgebase
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    Chapter 8 Modeling mass spectrometry-based protein analysis.
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    Chapter 9 Protein Identification from Tandem Mass Spectra by Database Searching
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    Chapter 10 LC-MS Data Analysis for Differential Protein Expression Detection
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    Chapter 11 Protein Identification by Spectral Networks Analysis
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    Chapter 12 Software Pipeline and Data Analysis for MS/MS Proteomics: The Trans-Proteomic Pipeline
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    Chapter 13 Analysis of high-throughput ELISA microarray data.
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    Chapter 14 Proteomics Databases and Repositories
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    Chapter 15 Preparing Molecular Interaction Data for Publication
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    Chapter 16 Submitting Proteomics Data to PRIDE Using PRIDE Converter
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    Chapter 17 Automated Data Integration and Determination of Posttranslational Modifications with the Protein Inference Engine
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    Chapter 18 An Integrated Top-Down and Bottom-Up Strategy for Characterization of Protein Isoforms and Modifications
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    Chapter 19 Phosphoproteome Resource for Systems Biology Research
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    Chapter 20 Protein-Centric Data Integration for Functional Analysis of Comparative Proteomics Data
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    Chapter 21 Integration of Proteomic and Metabolomic Profiling as well as Metabolic Modeling for the Functional Analysis of Metabolic Networks
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    Chapter 22 Time Series Proteome Profiling
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