Title |
The transcriptome of the novel dinoflagellate Oxyrrhis marina (Alveolata: Dinophyceae): response to salinity examined by 454 sequencing
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Published in |
BMC Genomics, October 2011
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DOI | 10.1186/1471-2164-12-519 |
Pubmed ID | |
Authors |
Chris D Lowe, Luciane V Mello, Najma Samatar, Laura E Martin, David JS Montagnes, Phillip C Watts |
Abstract |
The heterotrophic dinoflagellate Oxyrrhis marina is increasingly studied in experimental, ecological and evolutionary contexts. Its basal phylogenetic position within the dinoflagellates make O. marina useful for understanding the origin of numerous unusual features of the dinoflagellate lineage; its broad distribution has lent O. marina to the study of protist biogeography; and nutritive flexibility and eurytopy have made it a common lab rat for the investigation of physiological responses of marine heterotrophic flagellates. Nevertheless, genome-scale resources for O. marina are scarce. Here we present a 454-based transcriptome survey for this organism. In addition, we assess sequence read abundance, as a proxy for gene expression, in response to salinity, an environmental factor potentially important in determining O. marina spatial distributions. |
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Geographical breakdown
Country | Count | As % |
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Unknown | 1 | 100% |
Demographic breakdown
Type | Count | As % |
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Members of the public | 1 | 100% |
Mendeley readers
Geographical breakdown
Country | Count | As % |
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Portugal | 1 | 1% |
French Polynesia | 1 | 1% |
Brazil | 1 | 1% |
United Kingdom | 1 | 1% |
Japan | 1 | 1% |
United States | 1 | 1% |
Unknown | 75 | 93% |
Demographic breakdown
Readers by professional status | Count | As % |
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Student > Ph. D. Student | 28 | 35% |
Researcher | 20 | 25% |
Professor > Associate Professor | 5 | 6% |
Student > Master | 4 | 5% |
Lecturer > Senior Lecturer | 3 | 4% |
Other | 11 | 14% |
Unknown | 10 | 12% |
Readers by discipline | Count | As % |
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Agricultural and Biological Sciences | 44 | 54% |
Biochemistry, Genetics and Molecular Biology | 12 | 15% |
Environmental Science | 5 | 6% |
Immunology and Microbiology | 2 | 2% |
Earth and Planetary Sciences | 2 | 2% |
Other | 3 | 4% |
Unknown | 13 | 16% |