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Histone Variants

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Cover of 'Histone Variants'

Table of Contents

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    Book Overview
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    Chapter 1 Methods for Preparing Nucleosomes Containing Histone Variants
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    Chapter 2 Characterization of Posttranslational Modifications on Histone Variants
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    Chapter 3 Purification of Histone Variant-Interacting Chaperone Complexes
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    Chapter 4 Detection of Histone Modification Dynamics during the Cell Cycle by MS-Based Proteomics
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    Chapter 5 Histone Native Chromatin Immunoprecipitation
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    Chapter 6 How to Tackle Challenging ChIP-Seq, with Long-Range Cross-Linking, Using ATRX as an Example
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    Chapter 7 time-ChIP: A Method to Determine Long-Term Locus-Specific Nucleosome Inheritance
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    Chapter 8 MINCE-Seq: Mapping In Vivo Nascent Chromatin with EdU and Sequencing
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    Chapter 9 RChIP-Seq: Chromatin-Associated RNA Sequencing in Developmentally Staged Mouse Testes
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    Chapter 10 Bioinformatic Analysis of Nucleosome and Histone Variant Positioning
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    Chapter 11 Imaging Newly Synthesized and Old Histone Variant Dynamics Dependent on Chaperones Using the SNAP-Tag System
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    Chapter 12 Real-Time De Novo Deposition of Centromeric Histone-Associated Proteins Using the Auxin-Inducible Degradation System
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    Chapter 13 Live Imaging of Parental Histone Variant Dynamics in UVC-Damaged Chromatin
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    Chapter 14 CRISPR/Cas9 Gene Editing of Human Histone H2A Variant H2AX and MacroH2A
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    Chapter 15 Studying the Evolution of Histone Variants Using Phylogeny
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    Chapter 16 Characterization of Post-Meiotic Male Germ Cell Genome Organizational States
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    Chapter 17 An Animal Model for Genetic Analysis of Multi-Gene Families: Cloning and Transgenesis of Large Tandemly Repeated Histone Gene Clusters
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    Chapter 18 Imaging and Quantitation of Assembly Dynamics of the Centromeric Histone H3 Variant CENP-A in Drosophila melanogaster Spermatocytes by Immunofluorescence and Fluorescence In-Situ Hybridization (Immuno-FISH)
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    Chapter 19 Probing the Function of Oncohistones Using Mutant Transgenes and Knock-In Mutations
Attention for Chapter 5: Histone Native Chromatin Immunoprecipitation
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Chapter title
Histone Native Chromatin Immunoprecipitation
Chapter number 5
Book title
Histone Variants
Published in
Methods in molecular biology, August 2018
DOI 10.1007/978-1-4939-8663-7_5
Pubmed ID
Book ISBNs
978-1-4939-8662-0, 978-1-4939-8663-7
Authors

Alicia Alonso, Emily Bernstein, Dan Hasson

Abstract

Chromatin immunoprecipitation (ChIP) is becoming the standard method to study genome-wide distribution of histone variants and histone posttranslational modifications (PTMs). In this chapter, we describe a detailed native ChIP protocol and downstream procedures for the preparation of DNA libraries for next-generation sequencing. Compared to cross-linked ChIP, "native" ChIP has been shown to produce occupancy pattern data of histone PTMs and histone variants, with higher resolution and higher signal to noise ratio. We further present an adaptation of this protocol to perform native ChIP from as low as 50,000 cells.

Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 22 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
Unknown 22 100%

Demographic breakdown

Readers by professional status Count As %
Student > Ph. D. Student 5 23%
Researcher 4 18%
Student > Postgraduate 3 14%
Other 2 9%
Student > Master 2 9%
Other 3 14%
Unknown 3 14%
Readers by discipline Count As %
Agricultural and Biological Sciences 9 41%
Biochemistry, Genetics and Molecular Biology 6 27%
Immunology and Microbiology 3 14%
Psychology 1 5%
Unknown 3 14%