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ADP-ribosylation and NAD+ Utilizing Enzymes

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Cover of 'ADP-ribosylation and NAD+ Utilizing Enzymes'

Table of Contents

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    Book Overview
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    Chapter 1 Vitamin B3 in Health and Disease: Toward the Second Century of Discovery
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    Chapter 2 Monitoring Poly(ADP-Ribosyl)ation in Response to DNA Damage in Live Cells Using Fluorescently Tagged Macrodomains
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    Chapter 3 In Vitro Techniques for ADP-Ribosylated Substrate Identification
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    Chapter 4 Assessment of Intracellular Auto-Modification Levels of ARTD10 Using Mono-ADP-Ribose-Specific Macrodomains 2 and 3 of Murine Artd8
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    Chapter 5 Biochemical and Biophysical Assays of PAR-WWE Domain Interactions and Production of iso-ADPr for PAR-Binding Analysis
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    Chapter 6 Assays for NAD+-Dependent Reactions and NAD+ Metabolites
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    Chapter 7 Generating Protein-Linked and Protein-Free Mono-, Oligo-, and Poly(ADP-Ribose) In Vitro
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    Chapter 8 Methods to Study TCDD-Inducible Poly-ADP-Ribose Polymerase (TIPARP) Mono-ADP-Ribosyltransferase Activity
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    Chapter 9 Dictyostelium as a Model to Assess Site-Specific ADP-Ribosylation Events
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    Chapter 10 Mono-ADP-Ribosylation Catalyzed by Arginine-Specific ADP-Ribosyltransferases
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    Chapter 11 Monitoring Expression and Enzyme Activity of Ecto-ARTCs
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    Chapter 12 ADP-Ribosyl-Acceptor Hydrolase Activities Catalyzed by the ARH Family of Proteins
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    Chapter 13 Mono-ADP-Ribosylhydrolase Assays
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    Chapter 14 Hydrolysis of ADP-Ribosylation by Macrodomains
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    Chapter 15 HPLC-Based Enzyme Assays for Sirtuins
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    Chapter 16 Small-Molecule Screening Assay for Mono-ADP-Ribosyltransferases
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    Chapter 17 A Simple, Sensitive, and Generalizable Plate Assay for Screening PARP Inhibitors
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    Chapter 18 Nonlocalized Searching of HCD Data for Fast and Sensitive Identification of ADP-Ribosylated Peptides
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    Chapter 19 Quantitative Determination of MAR Hydrolase Residue Specificity In Vitro by Tandem Mass Spectrometry
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    Chapter 20 Detection of ADP-Ribosylating Bacterial Toxins
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    Chapter 21 Preparation of Recombinant Alphaviruses for Functional Studies of ADP-Ribosylation
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    Chapter 22 Monitoring the Sensitivity of T Cell Populations Towards NAD+ Released During Cell Preparation
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    Chapter 23 Identifying Target RNAs of PARPs
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    Chapter 24 ADPr-Peptide Synthesis
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    Chapter 25 Identifying Genomic Sites of ADP-Ribosylation Mediated by Specific Nuclear PARP Enzymes Using Click-ChIP
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    Chapter 26 Methods for Using a Genetically Encoded Fluorescent Biosensor to Monitor Nuclear NAD +
Attention for Chapter 24: ADPr-Peptide Synthesis
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Chapter title
ADPr-Peptide Synthesis
Chapter number 24
Book title
ADP-ribosylation and NAD+ Utilizing Enzymes
Published in
Methods in molecular biology, August 2018
DOI 10.1007/978-1-4939-8588-3_24
Pubmed ID
Book ISBNs
978-1-4939-8587-6, 978-1-4939-8588-3
Authors

Hans A. V. Kistemaker, Jim Voorneveld, Dmitri V. Filippov, Kistemaker, Hans A. V., Voorneveld, Jim, Filippov, Dmitri V.

Abstract

Synthetic mono-ADPr-peptides are useful for structural, biochemical, and proteomics studies. We describe here a protocol for the preparation of mono-ADPr-peptides based on a fairly standard Fmoc-based solid-phase synthesis. Phosphoribosylated precursor building blocks are introduced into the peptide chain on solid-phase and subsequently converted to ADPr-sites by chemical phosphorylation with adenosine phosphoramidite. Suitably protected phosphoribosylated glutamine, asparagine, and citrulline building blocks described in this protocol allow introduction of ADP-Gln, ADPr-Asn, and ADPr-Cit into peptide chains as demonstrated for three peptides. Trifunctional amino acids, for which base-sensitive side-chain protection is available, can be accommodated in the sequences flanking the ADPr-cites.

Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 8 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
Unknown 8 100%

Demographic breakdown

Readers by professional status Count As %
Student > Master 2 25%
Researcher 2 25%
Student > Ph. D. Student 1 13%
Other 1 13%
Professor > Associate Professor 1 13%
Other 0 0%
Unknown 1 13%
Readers by discipline Count As %
Chemistry 4 50%
Environmental Science 1 13%
Agricultural and Biological Sciences 1 13%
Biochemistry, Genetics and Molecular Biology 1 13%
Unknown 1 13%