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Post-Transcriptional Gene Regulation

Overview of attention for book
Cover of 'Post-Transcriptional Gene Regulation'

Table of Contents

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    Book Overview
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    Chapter 1 Introduction to Bioinformatics Resources for Post-transcriptional Regulation of Gene Expression.
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    Chapter 2 Post-Transcriptional Gene Regulation
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    Chapter 3 Transcriptional Regulation with CRISPR/Cas9 Effectors in Mammalian Cells.
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    Chapter 4 Studying the Translatome with Polysome Profiling.
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    Chapter 5 Exploring Ribosome Positioning on Translating Transcripts with Ribosome Profiling.
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    Chapter 6 Post-Transcriptional Gene Regulation
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    Chapter 7 Use of the pBUTR Reporter System for Scalable Analysis of 3' UTR-Mediated Gene Regulation.
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    Chapter 8 Comprehensive Identification of RNA-Binding Proteins by RNA Interactome Capture.
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    Chapter 9 Identifying RBP Targets with RIP-seq.
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    Chapter 10 PAR-CLIP: A Method for Transcriptome-Wide Identification of RNA Binding Protein Interaction Sites.
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    Chapter 11 Profiling the Binding Sites of RNA-Binding Proteins with Nucleotide Resolution Using iCLIP.
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    Chapter 12 A Pipeline for PAR-CLIP Data Analysis.
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    Chapter 13 Capture and Identification of miRNA Targets by Biotin Pulldown and RNA-seq.
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    Chapter 14 Post-Transcriptional Gene Regulation
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    Chapter 15 Genome-Wide Analysis of A-to-I RNA Editing.
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    Chapter 16 Nucleotide-Level Profiling of m5C RNA Methylation
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    Chapter 17 Probing N (6)-methyladenosine (m(6)A) RNA Modification in Total RNA with SCARLET.
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    Chapter 18 Genome-Wide Identification of Alternative Polyadenylation Events Using 3'T-Fill.
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    Chapter 19 Genome-Wide Profiling of Alternative Translation Initiation Sites.
  21. Altmetric Badge
    Chapter 20 Post-Transcriptional Gene Regulation
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    Chapter 21 Visualizing mRNA Dynamics in Live Neurons and Brain Tissues.
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    Chapter 22 Single-Molecule Live-Cell Visualization of Pre-mRNA Splicing.
Attention for Chapter 2: Post-Transcriptional Gene Regulation
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Chapter title
Post-Transcriptional Gene Regulation
Chapter number 2
Book title
Post-Transcriptional Gene Regulation
Published in
Methods in molecular biology, January 2016
DOI 10.1007/978-1-4939-3067-8_2
Pubmed ID
Book ISBNs
978-1-4939-3066-1, 978-1-4939-3067-8
Authors

Marchese, Domenica, Livi, Carmen Maria, Tartaglia, Gian Gaetano, Domenica Marchese, Carmen Maria Livi, Gian Gaetano Tartaglia

Editors

Erik Dassi

Abstract

Protein-RNA interactions play important roles in a wide variety of cellular processes, ranging from transcriptional and posttranscriptional regulation of genes to host defense against pathogens. In this chapter we present the computational approach catRAPID to predict protein-RNA interactions and discuss how it could be used to find trends in ribonucleoprotein networks. We envisage that the combination of computational and experimental approaches will be crucial to unravel the role of coding and noncoding RNAs in protein networks.

X Demographics

X Demographics

The data shown below were collected from the profiles of 2 X users who shared this research output. Click here to find out more about how the information was compiled.
Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 11 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
Italy 1 9%
Unknown 10 91%

Demographic breakdown

Readers by professional status Count As %
Student > Ph. D. Student 5 45%
Professor > Associate Professor 2 18%
Researcher 2 18%
Student > Doctoral Student 1 9%
Unknown 1 9%
Readers by discipline Count As %
Agricultural and Biological Sciences 7 64%
Neuroscience 2 18%
Biochemistry, Genetics and Molecular Biology 1 9%
Unknown 1 9%
Attention Score in Context

Attention Score in Context

This research output has an Altmetric Attention Score of 1. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 09 July 2016.
All research outputs
#17,810,867
of 22,880,230 outputs
Outputs from Methods in molecular biology
#7,245
of 13,132 outputs
Outputs of similar age
#267,805
of 393,712 outputs
Outputs of similar age from Methods in molecular biology
#752
of 1,471 outputs
Altmetric has tracked 22,880,230 research outputs across all sources so far. This one is in the 19th percentile – i.e., 19% of other outputs scored the same or lower than it.
So far Altmetric has tracked 13,132 research outputs from this source. They receive a mean Attention Score of 3.4. This one is in the 39th percentile – i.e., 39% of its peers scored the same or lower than it.
Older research outputs will score higher simply because they've had more time to accumulate mentions. To account for age we can compare this Altmetric Attention Score to the 393,712 tracked outputs that were published within six weeks on either side of this one in any source. This one is in the 27th percentile – i.e., 27% of its contemporaries scored the same or lower than it.
We're also able to compare this research output to 1,471 others from the same source and published within six weeks on either side of this one. This one is in the 42nd percentile – i.e., 42% of its contemporaries scored the same or lower than it.