Chapter 1 Arthropod Genome Sequencing and Assembly Strategies

Chapter 2 Genome Size Estimation and Quantitative Cytogenetics in Insects

Chapter 3 Isolation of High Molecular Weight DNA from Insects

Chapter 4 Long Range Sequencing and Validation of Insect Genome Assemblies

Chapter 5 Integrated Modeling of Structural Genes Using MCuNovo

Chapter 6 Using BUSCO to Assess Insect Genomic Resources

Chapter 7 The GFF3toolkit: QC and Merge Pipeline for Genome Annotation

Chapter 8 Using Formaldehyde-Assisted Isolation of Regulatory Elements (FAIRE) to Identify Functional Regulatory DNA in Insect Genomes

Chapter 9 Using RAMPAGE to Identify and Annotate Promoters in Insect Genomes

Chapter 10 CRM Discovery Beyond Model Insects

Chapter 11 Whole-Genome Bisulfite Sequencing for the Methylation Analysis of Insect Genomes

Chapter 12 Bioinformatic Analysis of Methylation Patterns Using Bisulfite Sequencing Data

Chapter 13 Physical Genome Mapping Using Fluorescence In Situ Hybridization with Mosquito Chromosomes

Chapter 14 Target-Enriched Endosymbiont Sequencing (TEEseq): A New High-Throughput Sequencing Approach Applied to the Comprehensive Characterization of Endosymbionts

Chapter 15 Preparation and Use of a Yeast shRNA Delivery System for Gene Silencing in Mosquito Larvae