Gene Regulatory Networks

Chapter 1 Gene Regulatory Network Inference: An Introductory Survey

Chapter 2 Statistical Network Inference for Time-Varying Molecular Data with Dynamic Bayesian Networks

Chapter 3 Overview and Evaluation of Recent Methods for Statistical Inference of Gene Regulatory Networks from Time Series Data

Chapter 4 Whole-Transcriptome Causal Network Inference with Genomic and Transcriptomic Data

Chapter 5 Causal Queries from Observational Data in Biological Systems via Bayesian Networks: An Empirical Study in Small Networks

Chapter 6 A Multiattribute Gaussian Graphical Model for Inferring Multiscale Regulatory Networks: An Application in Breast Cancer

Chapter 7 Integrative Approaches for Inference of Genome-Scale Gene Regulatory Networks

Chapter 8 Unsupervised Gene Network Inference with Decision Trees and Random Forests

Chapter 9 Tree-Based Learning of Regulatory Network Topologies and Dynamics with Jump3

Chapter 10 Network Inference from Single-Cell Transcriptomic Data

Chapter 11 Inferring Gene Regulatory Networks from Multiple Datasets

Chapter 12 Unsupervised GRN Ensemble

Chapter 13 Learning Differential Module Networks Across Multiple Experimental Conditions

Chapter 14 Stability in GRN Inference

Chapter 16 Scalable Inference of Ordinary Differential Equation Models of Biochemical Processes