RNA Bioinformatics

Table of Contents

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   Book Overview
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   Chapter 1 Free Energy Minimization to Predict RNA Secondary Structures and Computational RNA Design
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   Chapter 2 RNA Secondary Structure Prediction from Multi-Aligned Sequences
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   Chapter 3 A Simple Protocol for the Inference of RNA Global Pairwise Alignments
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   Chapter 4 De Novo Secondary Structure Motif Discovery Using RNAProfile
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   Chapter 5 Drawing and Editing the Secondary Structure(s) of RNA
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   Chapter 6 Modeling and Predicting RNA Three-Dimensional Structures
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   Chapter 7 Fast Prediction of RNA–RNA Interaction Using Heuristic Algorithm
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   Chapter 8 Quality Control of RNA-Seq Experiments.
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    Chapter 9 Accurate Mapping of RNA-Seq Data.
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    Chapter 10 Quantifying Entire Transcriptomes by Aligned RNA-Seq Data
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    Chapter 11 Transcriptome Assembly and Alternative Splicing Analysis
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    Chapter 12 Detection of post-transcriptional RNA editing events.
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    Chapter 13 Prediction of miRNA Targets
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    Chapter 14 Using Deep Sequencing Data for Identification of Editing Sites in Mature miRNAs
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    Chapter 15 NGS-Trex: An Automatic Analysis Workflow for RNA-Seq Data
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    Chapter 16 e-DNA Meta-Barcoding: From NGS Raw Data to Taxonomic Profiling.
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    Chapter 17 Deciphering metatranscriptomic data.
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    Chapter 18 RIP-Seq Data Analysis to Determine RNA–Protein Associations
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    Chapter 19 The ViennaRNA Web Services.
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    Chapter 20 Exploring the RNA Editing Potential of RNA-Seq Data by ExpEdit
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    Chapter 21 A Guideline for the Annotation of UTR Regulatory Elements in the UTRsite Collection
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    Chapter 22 Rfam: Annotating Families of Non-Coding RNA Sequences
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    Chapter 23 ASPicDB: A Database Web Tool for Alternative Splicing Analysis
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    Chapter 24 Analysis of Alternative Splicing Events in Custom Gene Datasets by AStalavista.
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    Chapter 25 Computational Design of Artificial RNA Molecules for Gene Regulation