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Microbial Environmental Genomics (MEG)

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Cover of 'Microbial Environmental Genomics (MEG)'

Table of Contents

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    Book Overview
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    Chapter 1 "Deciphering Archaeal Communities" Omics Tools in the Study of Archaeal Communities.
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    Chapter 2 Investigating the Endobacteria Which Thrive in Arbuscular Mycorrhizal Fungi
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    Chapter 3 GenoSol Platform: A Logistic and Technical Platform for Conserving and Exploring Soil Microbial Diversity.
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    Chapter 4 Sample Preparation for Fungal Community Analysis by High-Throughput Sequencing of Barcode Amplicons
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    Chapter 5 Fungal Communities in Soils: Soil Organic Matter Degradation.
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    Chapter 6 DNA-Based Characterization and Identification of Arbuscular Mycorrhizal Fungi Species.
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    Chapter 7 Molecular Identification of Soil Eukaryotes and Focused Approaches Targeting Protist and Faunal Groups Using High-Throughput Metabarcoding.
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    Chapter 8 Identification and In Situ Distribution of a Fungal Gene Marker: The Mating Type Genes of the Black Truffle
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    Chapter 9 Stable-Isotope Probing RNA to Study Plant/Fungus Interactions
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    Chapter 10 Targeted Gene Capture by Hybridization to Illuminate Ecosystem Functioning.
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    Chapter 11 Hybridization of Environmental Microbial Community Nucleic Acids by GeoChip.
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    Chapter 12 Reconstruction of Transformation Processes Catalyzed by the Soil Microbiome Using Metagenomic Approaches.
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    Chapter 13 MG-RAST, a Metagenomics Service for Analysis of Microbial Community Structure and Function.
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    Chapter 14 Analysis of Active Methylotrophic Communities: When DNA-SIP Meets High-Throughput Technologies.
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    Chapter 15 Functional Metagenomics: Construction and High-Throughput Screening of Fosmid Libraries for Discovery of Novel Carbohydrate-Active Enzymes.
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    Chapter 16 Metatranscriptomics of Soil Eukaryotic Communities
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    Chapter 17 Analysis of Ancient DNA in Microbial Ecology.
Attention for Chapter 9: Stable-Isotope Probing RNA to Study Plant/Fungus Interactions
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Chapter title
Stable-Isotope Probing RNA to Study Plant/Fungus Interactions
Chapter number 9
Book title
Microbial Environmental Genomics (MEG)
Published in
Methods in molecular biology, January 2016
DOI 10.1007/978-1-4939-3369-3_9
Pubmed ID
Book ISBNs
978-1-4939-3367-9, 978-1-4939-3369-3
Authors

Amandine Lê Van, Marie Duhamel, Achim Quaiser, Philippe Vandenkoornhuyse

Editors

Francis Martin, Stephane Uroz

Abstract

The use of stable-isotope probing (SIP) allows tracing specific labeled substrates into fungi leading to a better understanding of their role in biogeochemical cycles and their relationship with their environment. Stable-isotope probing combined with ribosomal RNA molecule, conserved in the three kingdoms of life, and messenger RNA analysis permits the linkage of diversity and function. Here, we describe two methods designed to investigate the interactions between plant and its associated mycorrhizal compartment by tracing carbon flux from the host plant to its symbionts.

Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 9 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
United States 1 11%
Unknown 8 89%

Demographic breakdown

Readers by professional status Count As %
Student > Ph. D. Student 2 22%
Student > Bachelor 2 22%
Professor > Associate Professor 1 11%
Student > Master 1 11%
Unknown 3 33%
Readers by discipline Count As %
Agricultural and Biological Sciences 5 56%
Environmental Science 1 11%
Unknown 3 33%