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Microbial Environmental Genomics (MEG)

Overview of attention for book
Cover of 'Microbial Environmental Genomics (MEG)'

Table of Contents

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    Book Overview
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    Chapter 1 "Deciphering Archaeal Communities" Omics Tools in the Study of Archaeal Communities.
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    Chapter 2 Investigating the Endobacteria Which Thrive in Arbuscular Mycorrhizal Fungi
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    Chapter 3 GenoSol Platform: A Logistic and Technical Platform for Conserving and Exploring Soil Microbial Diversity.
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    Chapter 4 Sample Preparation for Fungal Community Analysis by High-Throughput Sequencing of Barcode Amplicons
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    Chapter 5 Fungal Communities in Soils: Soil Organic Matter Degradation.
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    Chapter 6 DNA-Based Characterization and Identification of Arbuscular Mycorrhizal Fungi Species.
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    Chapter 7 Molecular Identification of Soil Eukaryotes and Focused Approaches Targeting Protist and Faunal Groups Using High-Throughput Metabarcoding.
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    Chapter 8 Identification and In Situ Distribution of a Fungal Gene Marker: The Mating Type Genes of the Black Truffle
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    Chapter 9 Stable-Isotope Probing RNA to Study Plant/Fungus Interactions
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    Chapter 10 Targeted Gene Capture by Hybridization to Illuminate Ecosystem Functioning.
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    Chapter 11 Hybridization of Environmental Microbial Community Nucleic Acids by GeoChip.
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    Chapter 12 Reconstruction of Transformation Processes Catalyzed by the Soil Microbiome Using Metagenomic Approaches.
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    Chapter 13 MG-RAST, a Metagenomics Service for Analysis of Microbial Community Structure and Function.
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    Chapter 14 Analysis of Active Methylotrophic Communities: When DNA-SIP Meets High-Throughput Technologies.
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    Chapter 15 Functional Metagenomics: Construction and High-Throughput Screening of Fosmid Libraries for Discovery of Novel Carbohydrate-Active Enzymes.
  17. Altmetric Badge
    Chapter 16 Metatranscriptomics of Soil Eukaryotic Communities
  18. Altmetric Badge
    Chapter 17 Analysis of Ancient DNA in Microbial Ecology.
Attention for Chapter 7: Molecular Identification of Soil Eukaryotes and Focused Approaches Targeting Protist and Faunal Groups Using High-Throughput Metabarcoding.
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Mentioned by

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3 tweeters

Citations

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25 Mendeley
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Chapter title
Molecular Identification of Soil Eukaryotes and Focused Approaches Targeting Protist and Faunal Groups Using High-Throughput Metabarcoding.
Chapter number 7
Book title
Microbial Environmental Genomics (MEG)
Published in
Methods in molecular biology, January 2016
DOI 10.1007/978-1-4939-3369-3_7
Pubmed ID
Book ISBNs
978-1-4939-3367-9, 978-1-4939-3369-3
Authors

Arjen de Groot, G, Laros, Ivo, Geisen, Stefan, G. Arjen de Groot, Ivo Laros, Stefan Geisen

Editors

Francis Martin, Stephane Uroz

Abstract

While until recently the application of high-throughput sequencing approaches has mostly been restricted to bacteria and fungi, these methods have now also become available to less often studied (eukaryotic) groups, such as fauna and protists. Such approaches allow routine diversity screening for large numbers of samples via DNA metabarcoding. Given the enormous taxonomic diversity within the eukaryote tree of life, metabarcoding approaches targeting a single specific DNA region do not allow to discriminate members of all eukaryote clades at high taxonomic resolution. Here, we report on protocols that enable studying the diversity of soil eukaryotes and, at high taxonomic resolution, of individual faunal and protist groups therein using a tiered approach: first, the use of a general eukaryotic primer set targeting a wide range of eukaryotes provides a rough impression on the entire diversity of protists and faunal groups. Second, more focused approaches enable deciphering subsets of soil eukaryotes in higher taxonomic detail. We provide primers and protocols for two examples: soil microarthropods and cercozoan protists.

Twitter Demographics

The data shown below were collected from the profiles of 3 tweeters who shared this research output. Click here to find out more about how the information was compiled.

Mendeley readers

The data shown below were compiled from readership statistics for 25 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
Unknown 25 100%

Demographic breakdown

Readers by professional status Count As %
Student > Ph. D. Student 7 28%
Researcher 5 20%
Student > Master 5 20%
Student > Bachelor 2 8%
Professor 2 8%
Other 3 12%
Unknown 1 4%
Readers by discipline Count As %
Agricultural and Biological Sciences 12 48%
Environmental Science 4 16%
Biochemistry, Genetics and Molecular Biology 2 8%
Immunology and Microbiology 1 4%
Earth and Planetary Sciences 1 4%
Other 0 0%
Unknown 5 20%

Attention Score in Context

This research output has an Altmetric Attention Score of 2. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 26 January 2016.
All research outputs
#3,295,364
of 7,047,715 outputs
Outputs from Methods in molecular biology
#1,316
of 4,880 outputs
Outputs of similar age
#150,926
of 317,770 outputs
Outputs of similar age from Methods in molecular biology
#240
of 994 outputs
Altmetric has tracked 7,047,715 research outputs across all sources so far. This one has received more attention than most of these and is in the 50th percentile.
So far Altmetric has tracked 4,880 research outputs from this source. They receive a mean Attention Score of 1.7. This one has gotten more attention than average, scoring higher than 68% of its peers.
Older research outputs will score higher simply because they've had more time to accumulate mentions. To account for age we can compare this Altmetric Attention Score to the 317,770 tracked outputs that were published within six weeks on either side of this one in any source. This one is in the 48th percentile – i.e., 48% of its contemporaries scored the same or lower than it.
We're also able to compare this research output to 994 others from the same source and published within six weeks on either side of this one. This one has gotten more attention than average, scoring higher than 70% of its contemporaries.