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A European Database of Fusarium graminearum and F. culmorum Trichothecene Genotypes

Overview of attention for article published in Frontiers in Microbiology, April 2016
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Title
A European Database of Fusarium graminearum and F. culmorum Trichothecene Genotypes
Published in
Frontiers in Microbiology, April 2016
DOI 10.3389/fmicb.2016.00406
Pubmed ID
Authors

Matias Pasquali, Marco Beyer, Antonio Logrieco, Kris Audenaert, Virgilio Balmas, Ryan Basler, Anne-Laure Boutigny, Jana Chrpová, Elżbieta Czembor, Tatiana Gagkaeva, María T. González-Jaén, Ingerd S. Hofgaard, Nagehan D. Köycü, Lucien Hoffmann, Jelena Lević, Patricia Marin, Thomas Miedaner, Quirico Migheli, Antonio Moretti, Marina E. H. Müller, Françoise Munaut, Päivi Parikka, Marine Pallez-Barthel, Jonathan Piec, Jonathan Scauflaire, Barbara Scherm, Slavica Stanković, Ulf Thrane, Silvio Uhlig, Adriaan Vanheule, Tapani Yli-Mattila, Susanne Vogelgsang

Abstract

Fusarium species, particularly Fusarium graminearum and F. culmorum, are the main cause of trichothecene type B contamination in cereals. Data on the distribution of Fusarium trichothecene genotypes in cereals in Europe are scattered in time and space. Furthermore, a common core set of related variables (sampling method, host cultivar, previous crop, etc.) that would allow more effective analysis of factors influencing the spatial and temporal population distribution, is lacking. Consequently, based on the available data, it is difficult to identify factors influencing chemotype distribution and spread at the European level. Here we describe the results of a collaborative integrated work which aims (1) to characterize the trichothecene genotypes of strains from three Fusarium species, collected over the period 2000-2013 and (2) to enhance the standardization of epidemiological data collection. Information on host plant, country of origin, sampling location, year of sampling and previous crop of 1147 F. graminearum, 479 F. culmorum, and 3 F. cortaderiae strains obtained from 17 European countries was compiled and a map of trichothecene type B genotype distribution was plotted for each species. All information on the strains was collected in a freely accessible and updatable database (www.catalogueeu.luxmcc.lu), which will serve as a starting point for epidemiological analysis of potential spatial and temporal trichothecene genotype shifts in Europe. The analysis of the currently available European dataset showed that in F. graminearum, the predominant genotype was 15-acetyldeoxynivalenol (15-ADON) (82.9%), followed by 3-acetyldeoxynivalenol (3-ADON) (13.6%), and nivalenol (NIV) (3.5%). In F. culmorum, the prevalent genotype was 3-ADON (59.9%), while the NIV genotype accounted for the remaining 40.1%. Both, geographical and temporal patterns of trichothecene genotypes distribution were identified.

Twitter Demographics

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Mendeley readers

The data shown below were compiled from readership statistics for 107 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
Brazil 2 2%
Germany 1 <1%
Unknown 104 97%

Demographic breakdown

Readers by professional status Count As %
Student > Ph. D. Student 20 19%
Student > Master 15 14%
Researcher 14 13%
Student > Doctoral Student 13 12%
Student > Postgraduate 8 7%
Other 22 21%
Unknown 15 14%
Readers by discipline Count As %
Agricultural and Biological Sciences 71 66%
Biochemistry, Genetics and Molecular Biology 6 6%
Engineering 3 3%
Environmental Science 2 2%
Pharmacology, Toxicology and Pharmaceutical Science 2 2%
Other 8 7%
Unknown 15 14%

Attention Score in Context

This research output has an Altmetric Attention Score of 1. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 06 April 2016.
All research outputs
#6,502,231
of 7,506,617 outputs
Outputs from Frontiers in Microbiology
#4,143
of 5,157 outputs
Outputs of similar age
#229,043
of 271,020 outputs
Outputs of similar age from Frontiers in Microbiology
#438
of 522 outputs
Altmetric has tracked 7,506,617 research outputs across all sources so far. This one is in the 1st percentile – i.e., 1% of other outputs scored the same or lower than it.
So far Altmetric has tracked 5,157 research outputs from this source. They receive a mean Attention Score of 4.2. This one is in the 1st percentile – i.e., 1% of its peers scored the same or lower than it.
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We're also able to compare this research output to 522 others from the same source and published within six weeks on either side of this one. This one is in the 1st percentile – i.e., 1% of its contemporaries scored the same or lower than it.