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Horizontal Gene Transfer

Overview of attention for book
Cover of 'Horizontal Gene Transfer'

Table of Contents

  1. Altmetric Badge
    Book Overview
  2. Altmetric Badge
    Chapter 1 Plasmid DNA Isolation and Visualization: Isolation and Characterization of Plasmids from Clinical Samples
  3. Altmetric Badge
    Chapter 2 Isolation and Visualization of Plasmids from Gram-Positive Bacteria of Interest in Public Health
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    Chapter 3 Detection, Isolation, and Characterization of Plasmids in the Environment
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    Chapter 4 Bacteriophage Isolation and Characterization: Phages of Escherichia coli
  6. Altmetric Badge
    Chapter 5 Detection and Characterization of Transposons in Bacteria
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    Chapter 6 Measuring Plasmid Conjugation Using Antibiotic Selection
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    Chapter 7 Measuring Plasmid Conjugation Using Fluorescent Reporters
  9. Altmetric Badge
    Chapter 8 Methods to Quantify DNA Transfer in Enterococcus
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    Chapter 9 Quantifying and Characterizing Distributive Conjugal Transfer in Mycobacterium smegmatis
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    Chapter 10 Spectrophotometric Assays to Quantify the Activity of T4SS ATPases
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    Chapter 11 Identification of Relaxase-DNA Covalent Complexes and DNA Strand Transfer Reaction Products by Polyacrylamide Gel Electrophoresis
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    Chapter 12 First Biochemical Steps on Bacterial Transposition Pathways
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    Chapter 13 Natural Transformation in Escherichia coli
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    Chapter 14 Integron Identification in Bacterial Genomes and Cassette Recombination Assays
  16. Altmetric Badge
    Chapter 15 Methods to Identify and Analyze Vesicle-Protected DNA Transfer
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    Chapter 16 Measuring Plasmid Stability in Gram-Negative Bacteria
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    Chapter 17 Methods for the Analysis and Characterization of Defense Mechanisms Against Horizontal Gene Transfer: CRISPR Systems
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    Chapter 18 The Mobilome: Metagenomic Analysis of Circular Plasmids, Viruses, and Other Extrachromosomal Elements
  20. Altmetric Badge
    Chapter 19 Identifying Conjugative Plasmids and Integrative Conjugative Elements with CONJscan
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    Chapter 20 PlasmidFinder and In Silico pMLST: Identification and Typing of Plasmid Replicons in Whole-Genome Sequencing (WGS)
  22. Altmetric Badge
    Chapter 21 MOBscan: Automated Annotation of MOB Relaxases
  23. Altmetric Badge
    Chapter 22 Plasmid Typing and Classification
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    Chapter 23 Plasmid Reconstruction from Next-Gen Data: A Detailed Protocol for the Use of PLACNETw for the Reconstruction of Plasmids from WGS Datasets
  25. Altmetric Badge
    Chapter 24 Statistical Analysis of Accessory Genome
  26. Altmetric Badge
    Chapter 25 Inferring Horizontal Gene Transfer with DarkHorse, Phylomizer, and ETE Toolkits
  27. Altmetric Badge
    Chapter 26 Methods to Study Fitness and Compensatory Adaptation in Plasmid-Carrying Bacteria
  28. Altmetric Badge
    Chapter 27 A Broad Host Range Plasmid-Based Roadmap for ssDNA-Based Recombineering in Gram-Negative Bacteria
  29. Altmetric Badge
    Chapter 28 Conjugative Assembly Genome Engineering (CAGE)
Attention for Chapter 23: Plasmid Reconstruction from Next-Gen Data: A Detailed Protocol for the Use of PLACNETw for the Reconstruction of Plasmids from WGS Datasets
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Chapter title
Plasmid Reconstruction from Next-Gen Data: A Detailed Protocol for the Use of PLACNETw for the Reconstruction of Plasmids from WGS Datasets
Chapter number 23
Book title
Methods in Molecular Biology
Published in
Methods in molecular biology, October 2019
DOI 10.1007/978-1-4939-9877-7_23
Pubmed ID
Book ISBNs
978-1-4939-9876-0, 978-1-4939-9877-7
Authors

de Toro, María, Lanza, Val F., Vielva, Luis, Redondo-Salvo, Santiago, de la Cruz, Fernando, María de Toro, Val F. Lanza, Luis Vielva, Santiago Redondo-Salvo, Fernando de la Cruz

X Demographics

X Demographics

The data shown below were collected from the profile of 1 X user who shared this research output. Click here to find out more about how the information was compiled.
Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 8 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
Unknown 8 100%

Demographic breakdown

Readers by professional status Count As %
Student > Ph. D. Student 3 38%
Student > Master 3 38%
Researcher 1 13%
Professor 1 13%
Readers by discipline Count As %
Agricultural and Biological Sciences 3 38%
Biochemistry, Genetics and Molecular Biology 2 25%
Immunology and Microbiology 2 25%
Medicine and Dentistry 1 13%
Attention Score in Context

Attention Score in Context

This research output has an Altmetric Attention Score of 1. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 05 October 2019.
All research outputs
#15,515,481
of 23,058,939 outputs
Outputs from Methods in molecular biology
#5,403
of 13,196 outputs
Outputs of similar age
#215,790
of 350,028 outputs
Outputs of similar age from Methods in molecular biology
#37
of 93 outputs
Altmetric has tracked 23,058,939 research outputs across all sources so far. This one is in the 22nd percentile – i.e., 22% of other outputs scored the same or lower than it.
So far Altmetric has tracked 13,196 research outputs from this source. They receive a mean Attention Score of 3.4. This one is in the 44th percentile – i.e., 44% of its peers scored the same or lower than it.
Older research outputs will score higher simply because they've had more time to accumulate mentions. To account for age we can compare this Altmetric Attention Score to the 350,028 tracked outputs that were published within six weeks on either side of this one in any source. This one is in the 29th percentile – i.e., 29% of its contemporaries scored the same or lower than it.
We're also able to compare this research output to 93 others from the same source and published within six weeks on either side of this one. This one is in the 46th percentile – i.e., 46% of its contemporaries scored the same or lower than it.