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Algorithms for Computational Biology

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Cover of 'Algorithms for Computational Biology'

Table of Contents

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    Book Overview
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    Chapter 1 Parallel Generalized Suffix Tree Construction for Genomic Data
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    Chapter 2 A 3.5-Approximation Algorithm for Sorting by Intergenic Transpositions
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    Chapter 3 Heuristics for Reversal Distance Between Genomes with Duplicated Genes
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    Chapter 4 Extending Maximal Perfect Haplotype Blocks to the Realm of Pangenomics
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    Chapter 5 Gaps and Runs in Syntenic Alignments
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    Chapter 6 Comparing Integer Linear Programming to SAT-Solving for Hard Problems in Computational and Systems Biology
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    Chapter 7 Combining Networks Using Cherry Picking Sequences
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    Chapter 8 Linear Time Algorithm for Tree-Child Network Containment
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    Chapter 9 PathOGiST: A Novel Method for Clustering Pathogen Isolates by Combining Multiple Genotyping Signals
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    Chapter 10 TreeSolve: Rapid Error-Correction of Microbial Gene Trees
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    Chapter 11 Time Series Adjustment Enhancement of Hierarchical Modeling of Arabidopsis Thaliana Gene Interactions
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    Chapter 12 BESTox: A Convolutional Neural Network Regression Model Based on Binary-Encoded SMILES for Acute Oral Toxicity Prediction of Chemical Compounds
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    Chapter 13 Stratified Test Alleviates Batch Effects in Single-Cell Data
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    Chapter 14 A Topological Data Analysis Approach on Predicting Phenotypes from Gene Expression Data
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    Chapter 15 BOAssembler: A Bayesian Optimization Framework to Improve RNA-Seq Assembly Performance
Attention for Chapter 12: BESTox: A Convolutional Neural Network Regression Model Based on Binary-Encoded SMILES for Acute Oral Toxicity Prediction of Chemical Compounds
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Chapter title
BESTox: A Convolutional Neural Network Regression Model Based on Binary-Encoded SMILES for Acute Oral Toxicity Prediction of Chemical Compounds
Chapter number 12
Book title
Algorithms for Computational Biology
Published by
Springer, Cham, April 2020
DOI 10.1007/978-3-030-42266-0_12
Book ISBNs
978-3-03-042265-3, 978-3-03-042266-0
Authors

Jiarui Chen, Hong-Hin Cheong, Shirley Weng In Siu

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