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The Triform algorithm: improved sensitivity and specificity in ChIP-Seq peak finding

Overview of attention for article published in BMC Bioinformatics, July 2012
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About this Attention Score

  • Good Attention Score compared to outputs of the same age (66th percentile)
  • Good Attention Score compared to outputs of the same age and source (66th percentile)

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5 X users

Citations

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8 Dimensions

Readers on

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48 Mendeley
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2 CiteULike
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Title
The Triform algorithm: improved sensitivity and specificity in ChIP-Seq peak finding
Published in
BMC Bioinformatics, July 2012
DOI 10.1186/1471-2105-13-176
Pubmed ID
Authors

Karl Kornacker, Morten Beck Rye, Tony Håndstad, Finn Drabløs

Abstract

Chromatin immunoprecipitation combined with high-throughput sequencing (ChIP-Seq) is the most frequently used method to identify the binding sites of transcription factors. Active binding sites can be seen as peaks in enrichment profiles when the sequencing reads are mapped to a reference genome. However, the profiles are normally noisy, making it challenging to identify all significantly enriched regions in a reliable way and with an acceptable false discovery rate.

X Demographics

X Demographics

The data shown below were collected from the profiles of 5 X users who shared this research output. Click here to find out more about how the information was compiled.
Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 48 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
United States 3 6%
United Kingdom 1 2%
Germany 1 2%
Unknown 43 90%

Demographic breakdown

Readers by professional status Count As %
Researcher 21 44%
Professor 6 13%
Student > Ph. D. Student 6 13%
Student > Master 6 13%
Other 3 6%
Other 5 10%
Unknown 1 2%
Readers by discipline Count As %
Agricultural and Biological Sciences 31 65%
Computer Science 5 10%
Biochemistry, Genetics and Molecular Biology 4 8%
Physics and Astronomy 1 2%
Social Sciences 1 2%
Other 3 6%
Unknown 3 6%
Attention Score in Context

Attention Score in Context

This research output has an Altmetric Attention Score of 4. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 01 August 2012.
All research outputs
#7,820,309
of 23,881,329 outputs
Outputs from BMC Bioinformatics
#3,053
of 7,454 outputs
Outputs of similar age
#55,600
of 166,301 outputs
Outputs of similar age from BMC Bioinformatics
#33
of 96 outputs
Altmetric has tracked 23,881,329 research outputs across all sources so far. This one has received more attention than most of these and is in the 67th percentile.
So far Altmetric has tracked 7,454 research outputs from this source. They typically receive a little more attention than average, with a mean Attention Score of 5.5. This one has gotten more attention than average, scoring higher than 58% of its peers.
Older research outputs will score higher simply because they've had more time to accumulate mentions. To account for age we can compare this Altmetric Attention Score to the 166,301 tracked outputs that were published within six weeks on either side of this one in any source. This one has gotten more attention than average, scoring higher than 66% of its contemporaries.
We're also able to compare this research output to 96 others from the same source and published within six weeks on either side of this one. This one has gotten more attention than average, scoring higher than 66% of its contemporaries.