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Genome sequence of the olive tree, Olea europaea

Overview of attention for article published in Giga Science, June 2016
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About this Attention Score

  • In the top 5% of all research outputs scored by Altmetric
  • One of the highest-scoring outputs from this source (#7 of 717)
  • High Attention Score compared to outputs of the same age (99th percentile)

Mentioned by

news
16 news outlets
blogs
5 blogs
twitter
113 tweeters
peer_reviews
1 peer review site
facebook
7 Facebook pages

Citations

dimensions_citation
87 Dimensions

Readers on

mendeley
167 Mendeley
citeulike
1 CiteULike
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Title
Genome sequence of the olive tree, Olea europaea
Published in
Giga Science, June 2016
DOI 10.1186/s13742-016-0134-5
Pubmed ID
Authors

Fernando Cruz, Irene Julca, Jèssica Gómez-Garrido, Damian Loska, Marina Marcet-Houben, Emilio Cano, Beatriz Galán, Leonor Frias, Paolo Ribeca, Sophia Derdak, Marta Gut, Manuel Sánchez-Fernández, Jose Luis García, Ivo G. Gut, Pablo Vargas, Tyler S. Alioto, Toni Gabaldón

Abstract

The Mediterranean olive tree (Olea europaea subsp. europaea) was one of the first trees to be domesticated and is currently of major agricultural importance in the Mediterranean region as the source of olive oil. The molecular bases underlying the phenotypic differences among domesticated cultivars, or between domesticated olive trees and their wild relatives, remain poorly understood. Both wild and cultivated olive trees have 46 chromosomes (2n). A total of 543 Gb of raw DNA sequence from whole genome shotgun sequencing, and a fosmid library containing 155,000 clones from a 1,000+ year-old olive tree (cv. Farga) were generated by Illumina sequencing using different combinations of mate-pair and pair-end libraries. Assembly gave a final genome with a scaffold N50 of 443 kb, and a total length of 1.31 Gb, which represents 95 % of the estimated genome length (1.38 Gb). In addition, the associated fungus Aureobasidium pullulans was partially sequenced. Genome annotation, assisted by RNA sequencing from leaf, root, and fruit tissues at various stages, resulted in 56,349 unique protein coding genes, suggesting recent genomic expansion. Genome completeness, as estimated using the CEGMA pipeline, reached 98.79 %. The assembled draft genome of O. europaea will provide a valuable resource for the study of the evolution and domestication processes of this important tree, and allow determination of the genetic bases of key phenotypic traits. Moreover, it will enhance breeding programs and the formation of new varieties.

Twitter Demographics

The data shown below were collected from the profiles of 113 tweeters who shared this research output. Click here to find out more about how the information was compiled.

Mendeley readers

The data shown below were compiled from readership statistics for 167 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
Spain 3 2%
Pakistan 2 1%
United States 1 <1%
Unknown 161 96%

Demographic breakdown

Readers by professional status Count As %
Researcher 46 28%
Student > Ph. D. Student 37 22%
Student > Master 20 12%
Student > Postgraduate 11 7%
Student > Bachelor 8 5%
Other 27 16%
Unknown 18 11%
Readers by discipline Count As %
Agricultural and Biological Sciences 96 57%
Biochemistry, Genetics and Molecular Biology 31 19%
Computer Science 4 2%
Chemistry 4 2%
Social Sciences 2 1%
Other 7 4%
Unknown 23 14%

Attention Score in Context

This research output has an Altmetric Attention Score of 216. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 26 November 2019.
All research outputs
#74,390
of 15,099,074 outputs
Outputs from Giga Science
#7
of 717 outputs
Outputs of similar age
#2,569
of 263,937 outputs
Outputs of similar age from Giga Science
#1
of 1 outputs
Altmetric has tracked 15,099,074 research outputs across all sources so far. Compared to these this one has done particularly well and is in the 99th percentile: it's in the top 5% of all research outputs ever tracked by Altmetric.
So far Altmetric has tracked 717 research outputs from this source. They typically receive a lot more attention than average, with a mean Attention Score of 23.5. This one has done particularly well, scoring higher than 99% of its peers.
Older research outputs will score higher simply because they've had more time to accumulate mentions. To account for age we can compare this Altmetric Attention Score to the 263,937 tracked outputs that were published within six weeks on either side of this one in any source. This one has done particularly well, scoring higher than 99% of its contemporaries.
We're also able to compare this research output to 1 others from the same source and published within six weeks on either side of this one. This one has scored higher than all of them