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Metagenomic Analysis of a Southern Maritime Antarctic Soil

Overview of attention for article published in Frontiers in Microbiology, January 2012
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About this Attention Score

  • In the top 25% of all research outputs scored by Altmetric
  • High Attention Score compared to outputs of the same age (93rd percentile)
  • High Attention Score compared to outputs of the same age and source (95th percentile)

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1 patent
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1 Facebook page

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201 Mendeley
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Title
Metagenomic Analysis of a Southern Maritime Antarctic Soil
Published in
Frontiers in Microbiology, January 2012
DOI 10.3389/fmicb.2012.00403
Pubmed ID
Authors

David A. Pearce, Kevin K. Newsham, Michael A. S. Thorne, Leo Calvo-Bado, Martin Krsek, Paris Laskaris, Andy Hodson, Elizabeth M. Wellington

Abstract

Our current understanding of Antarctic soils is derived from direct culture on selective media, biodiversity studies based on clone library construction and analysis, quantitative PCR amplification of specific gene sequences and the application of generic microarrays for microbial community analysis. Here, we investigated the biodiversity and functional potential of a soil community at Mars Oasis on Alexander Island in the southern Maritime Antarctic, by applying 454 pyrosequencing technology to a metagenomic library constructed from soil genomic DNA. The results suggest that the commonly cited range of phylotypes used in clone library construction and analysis of 78-730 OTUs (de-replicated to 30-140) provides low coverage of the major groups present (∼5%). The vast majority of functional genes (>77%) were for structure, carbohydrate metabolism, and DNA/RNA processing and modification. This study suggests that prokaryotic diversity in Antarctic terrestrial environments appears to be limited at the generic level, with Proteobacteria, Actinobacteria being common. Cyanobacteria were surprisingly under-represented at 3.4% of sequences, although ∼1% of the genes identified were involved in CO(2) fixation. At the sequence level there appeared to be much greater heterogeneity, and this might be due to high divergence within the relatively restricted lineages which have successfully colonized Antarctic terrestrial environments.

X Demographics

X Demographics

The data shown below were collected from the profiles of 2 X users who shared this research output. Click here to find out more about how the information was compiled.
Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 201 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
Chile 2 <1%
Brazil 2 <1%
South Africa 1 <1%
India 1 <1%
Canada 1 <1%
Belgium 1 <1%
Estonia 1 <1%
Spain 1 <1%
Unknown 191 95%

Demographic breakdown

Readers by professional status Count As %
Student > Ph. D. Student 51 25%
Researcher 33 16%
Student > Master 29 14%
Student > Bachelor 16 8%
Student > Doctoral Student 11 5%
Other 26 13%
Unknown 35 17%
Readers by discipline Count As %
Agricultural and Biological Sciences 80 40%
Biochemistry, Genetics and Molecular Biology 26 13%
Environmental Science 22 11%
Immunology and Microbiology 11 5%
Earth and Planetary Sciences 7 3%
Other 12 6%
Unknown 43 21%
Attention Score in Context

Attention Score in Context

This research output has an Altmetric Attention Score of 15. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 22 December 2022.
All research outputs
#2,069,369
of 23,394,907 outputs
Outputs from Frontiers in Microbiology
#1,566
of 25,763 outputs
Outputs of similar age
#15,889
of 247,050 outputs
Outputs of similar age from Frontiers in Microbiology
#15
of 318 outputs
Altmetric has tracked 23,394,907 research outputs across all sources so far. Compared to these this one has done particularly well and is in the 91st percentile: it's in the top 10% of all research outputs ever tracked by Altmetric.
So far Altmetric has tracked 25,763 research outputs from this source. They typically receive a little more attention than average, with a mean Attention Score of 6.4. This one has done particularly well, scoring higher than 93% of its peers.
Older research outputs will score higher simply because they've had more time to accumulate mentions. To account for age we can compare this Altmetric Attention Score to the 247,050 tracked outputs that were published within six weeks on either side of this one in any source. This one has done particularly well, scoring higher than 93% of its contemporaries.
We're also able to compare this research output to 318 others from the same source and published within six weeks on either side of this one. This one has done particularly well, scoring higher than 95% of its contemporaries.