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Statistical evaluation of synchronous spike patterns extracted by frequent item set mining

Overview of attention for article published in Frontiers in Computational Neuroscience, January 2013
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Title
Statistical evaluation of synchronous spike patterns extracted by frequent item set mining
Published in
Frontiers in Computational Neuroscience, January 2013
DOI 10.3389/fncom.2013.00132
Pubmed ID
Authors

Emiliano Torre, David Picado-Muiño, Michael Denker, Christian Borgelt, Sonja Grün

Abstract

We recently proposed frequent itemset mining (FIM) as a method to perform an optimized search for patterns of synchronous spikes (item sets) in massively parallel spike trains. This search outputs the occurrence count (support) of individual patterns that are not trivially explained by the counts of any superset (closed frequent item sets). The number of patterns found by FIM makes direct statistical tests infeasible due to severe multiple testing. To overcome this issue, we proposed to test the significance not of individual patterns, but instead of their signatures, defined as the pairs of pattern size z and support c. Here, we derive in detail a statistical test for the significance of the signatures under the null hypothesis of full independence (pattern spectrum filtering, PSF) by means of surrogate data. As a result, injected spike patterns that mimic assembly activity are well detected, yielding a low false negative rate. However, this approach is prone to additionally classify patterns resulting from chance overlap of real assembly activity and background spiking as significant. These patterns represent false positives with respect to the null hypothesis of having one assembly of given signature embedded in otherwise independent spiking activity. We propose the additional method of pattern set reduction (PSR) to remove these false positives by conditional filtering. By employing stochastic simulations of parallel spike trains with correlated activity in form of injected spike synchrony in subsets of the neurons, we demonstrate for a range of parameter settings that the analysis scheme composed of FIM, PSF and PSR allows to reliably detect active assemblies in massively parallel spike trains.

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Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 90 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
United States 3 3%
Germany 1 1%
Unknown 86 96%

Demographic breakdown

Readers by professional status Count As %
Student > Ph. D. Student 24 27%
Researcher 17 19%
Student > Master 11 12%
Student > Doctoral Student 7 8%
Student > Bachelor 6 7%
Other 18 20%
Unknown 7 8%
Readers by discipline Count As %
Neuroscience 16 18%
Agricultural and Biological Sciences 15 17%
Computer Science 12 13%
Engineering 12 13%
Physics and Astronomy 6 7%
Other 13 14%
Unknown 16 18%
Attention Score in Context

Attention Score in Context

This research output has an Altmetric Attention Score of 2. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 01 August 2014.
All research outputs
#14,198,374
of 22,759,618 outputs
Outputs from Frontiers in Computational Neuroscience
#691
of 1,338 outputs
Outputs of similar age
#167,685
of 280,897 outputs
Outputs of similar age from Frontiers in Computational Neuroscience
#60
of 131 outputs
Altmetric has tracked 22,759,618 research outputs across all sources so far. This one is in the 35th percentile – i.e., 35% of other outputs scored the same or lower than it.
So far Altmetric has tracked 1,338 research outputs from this source. They typically receive a little more attention than average, with a mean Attention Score of 6.2. This one is in the 44th percentile – i.e., 44% of its peers scored the same or lower than it.
Older research outputs will score higher simply because they've had more time to accumulate mentions. To account for age we can compare this Altmetric Attention Score to the 280,897 tracked outputs that were published within six weeks on either side of this one in any source. This one is in the 38th percentile – i.e., 38% of its contemporaries scored the same or lower than it.
We're also able to compare this research output to 131 others from the same source and published within six weeks on either side of this one. This one has gotten more attention than average, scoring higher than 53% of its contemporaries.