Title |
TVB-EduPack—An Interactive Learning and Scripting Platform for The Virtual Brain
|
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Published in |
Frontiers in Neuroinformatics, November 2015
|
DOI | 10.3389/fninf.2015.00027 |
Pubmed ID | |
Authors |
Henrik Matzke, Michael Schirner, Daniel Vollbrecht, Simon Rothmeier, Adalberto Llarena, Raúl Rojas, Paul Triebkorn, Lia Domide, Jochen Mersmann, Ana Solodkin, Viktor K. Jirsa, Anthony Randal McIntosh, Petra Ritter |
Abstract |
The Virtual Brain (TVB; thevirtualbrain.org) is a neuroinformatics platform for full brain network simulation based on individual anatomical connectivity data. The framework addresses clinical and neuroscientific questions by simulating multi-scale neural dynamics that range from local population activity to large-scale brain function and related macroscopic signals like electroencephalography and functional magnetic resonance imaging. TVB is equipped with a graphical and a command-line interface to create models that capture the characteristic biological variability to predict the brain activity of individual subjects. To enable researchers from various backgrounds a quick start into TVB and brain network modeling in general, we developed an educational module: TVB-EduPack. EduPack offers two educational functionalities that seamlessly integrate into TVB's graphical user interface (GUI): (i) interactive tutorials introduce GUI elements, guide through the basic mechanics of software usage and develop complex use-case scenarios; animations, videos and textual descriptions transport essential principles of computational neuroscience and brain modeling; (ii) an automatic script generator records model parameters and produces input files for TVB's Python programming interface; thereby, simulation configurations can be exported as scripts that allow flexible customization of the modeling process and self-defined batch- and post-processing applications while benefitting from the full power of the Python language and its toolboxes. This article covers the implementation of TVB-EduPack and its integration into TVB architecture. Like TVB, EduPack is an open source community project that lives from the participation and contribution of its users. TVB-EduPack can be obtained as part of TVB from thevirtualbrain.org. |
X Demographics
Geographical breakdown
Country | Count | As % |
---|---|---|
United States | 3 | 30% |
Switzerland | 2 | 20% |
Italy | 1 | 10% |
Belgium | 1 | 10% |
Unknown | 3 | 30% |
Demographic breakdown
Type | Count | As % |
---|---|---|
Members of the public | 6 | 60% |
Scientists | 3 | 30% |
Practitioners (doctors, other healthcare professionals) | 1 | 10% |
Mendeley readers
Geographical breakdown
Country | Count | As % |
---|---|---|
Chile | 1 | 1% |
Unknown | 72 | 99% |
Demographic breakdown
Readers by professional status | Count | As % |
---|---|---|
Researcher | 16 | 22% |
Student > Ph. D. Student | 13 | 18% |
Student > Master | 7 | 10% |
Student > Bachelor | 6 | 8% |
Professor > Associate Professor | 6 | 8% |
Other | 13 | 18% |
Unknown | 12 | 16% |
Readers by discipline | Count | As % |
---|---|---|
Neuroscience | 17 | 23% |
Engineering | 8 | 11% |
Medicine and Dentistry | 8 | 11% |
Agricultural and Biological Sciences | 6 | 8% |
Computer Science | 5 | 7% |
Other | 9 | 12% |
Unknown | 20 | 27% |